PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462941786 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 280aa MW: 31207.7 Da PI: 6.313 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.3 | 4.1e-19 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt+Ed+llv+ v+q+G g+W+++++ g++R++k+c++rw +yl 462941786 17 KGPWTTQEDKLLVEHVRQHGEGRWNSVSKLTGLKRSGKSCRLRWVNYL 64 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3.2e-17 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++ 462941786 70 RGKITPQEETIIVQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114 8999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.408 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.47E-29 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-16 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-17 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-23 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.73E-12 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 25.427 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 7.9E-16 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-15 | 70 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-24 | 72 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.91E-10 | 74 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MEGQLSWGRQ EVDGWRKGPW TTQEDKLLVE HVRQHGEGRW NSVSKLTGLK RSGKSCRLRW 60 VNYLRPDLKR GKITPQEETI IVQLHALWGN RWSTIARSLP GRTDNEIKNY WRTHFKKGKP 120 SKNIERARAR FLKQRREMQS QQQQQQQQQL QLVAKDDNEL DATRAAGTVT DDEDRGSAVV 180 DDNACAATTT TAAAAESGGH QAQHEEDLIV MHDAMDFMFP MSCALLLHGA GGQGVAGDGS 240 CCGSTSEEYG SSEVEDGATW GSLWNLEDVA VDGGACTLLW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 17 | 117 | 27 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462941786 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109620 | 1e-132 | AK109620.1 Oryza sativa Japonica Group cDNA clone:002-138-A05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004978126.1 | 1e-128 | transcription repressor MYB6 | ||||
TrEMBL | A0A3L6PVQ3 | 1e-128 | A0A3L6PVQ3_PANMI; Transcription repressor MYB6-like | ||||
STRING | Si010822m | 1e-128 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3243 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 2e-66 | myb domain protein 79 |