PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462941580
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 425aa    MW: 47784 Da    PI: 5.756
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462941580genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.41.7e-50131401128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                lppGf FhP+d el+++yLk+k++g++++  ++i+evdiyk+ePwdLp+  ++  e+++w+fF++rd+ky+tg ++nrat++gyWk+tgkd++++  +++
  462941580  13 LPPGFGFHPSDAELISHYLKRKIHGQRIDY-DIIPEVDIYKHEPWDLPSkcNLPIEDNKWHFFACRDRKYPTGAKSNRATRAGYWKSTGKDRAIKL-NKR 110
                79****************************.99***************5245555999**************************************.999 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                + g+kktLvf+kgr p+g++t+W+mhey +
  462941580 111 TLGTKKTLVFHKGRPPTGKRTEWIMHEYYI 140
                ****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-595162IPR003441NAC domain
PROSITE profilePS5100554.99313163IPR003441NAC domain
PfamPF023652.4E-2514139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MHCNMEALRN MNLPPGFGFH PSDAELISHY LKRKIHGQRI DYDIIPEVDI YKHEPWDLPS  60
KCNLPIEDNK WHFFACRDRK YPTGAKSNRA TRAGYWKSTG KDRAIKLNKR TLGTKKTLVF  120
HKGRPPTGKR TEWIMHEYYI DENECQANPD MKDAFVLCRV TKREDWALEN GNEVGNKNPH  180
PNQLNYAATS VVIAEKQEDA DTSGICSGEP NRVATPASAE LSNNDATAEC IPHSPYSESE  240
MQKFLDDLFD FSSDTSVDND CAGLSPIEQN SESLNLQNTN SMAPKIEPNQ ASPFQNGFDD  300
TDFLRLEDFV DSKSIWGLDD APATDQAYSM VGFGTLPNNF EGTWNENLQL HQGNHNTNLS  360
NENADNGITV RRRNVTTSSA SGLPSTRRIR LQVGVNKMVT SNSETINQTI QFAVLKGYYH  420
SGISL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-4611663172Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462941580
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312344.11e-167NAC domain-containing protein 74
SwissprotQ7GCL71e-139NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBLA0A3L6FK171e-166A0A3L6FK17_MAIZE; NAC domain-containing protein 74
STRINGGRMZM2G064541_P011e-165(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75603847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.17e-67NAC domain containing protein 57
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]