PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462941497 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 393aa MW: 43071.6 Da PI: 9.1785 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.2 | 1.3e-52 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +ppGfrFhPt+eel+++yLkkkv++++++l +vi++vd++k+ePwd+++ ++ + +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s + 462941497 11 VPPGFRFHPTEEELLTYYLKKKVASERIDL-DVIRDVDLNKLEPWDIQEkcRIGSgPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYS-GA 108 69****************************.9***************952444443456**************************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +g++ktLvfykgrap+g+k+dW+mheyrl 462941497 109 ARIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139 99***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.8E-57 | 7 | 184 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.002 | 11 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-28 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MSISVNGQSV VPPGFRFHPT EEELLTYYLK KKVASERIDL DVIRDVDLNK LEPWDIQEKC 60 RIGSGPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIYSGAAR IGMRKTLVFY 120 KGRAPHGQKS DWIMHEYRLD DAAHPAAVAA GDHYYPSPPH AIRGPAGDQA AQEEGWVICR 180 VFKKKNLVHN HGQSSGATVA AVTTNHNNKM GSAPTTMESS PTSNCSSVTV VSDHAKTTML 240 HSSASDDALD HILQYMRKQD TKPALLDHHL ASAATTACPS SFYGKFMKLP PLEHVGGGGG 300 LLAPNNPAES SYAAVDASGG ITDWDSLDRL AAYELNGLSV DASKNMAAFF DVEPGSVRRR 360 RRLLHRRRPM EPGAVVGVVV ARGPDHEQRI IMI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-45 | 11 | 186 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00321 | DAP | Transfer from AT2G46770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462941497 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT075080 | 0.0 | KT075080.1 Panicum virgatum secondary wall NAC master switch (SWN1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002436417.1 | 1e-163 | NAC domain-containing protein 43 | ||||
Refseq | XP_025810838.1 | 1e-163 | NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 1e-104 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A1E5VDB9 | 1e-177 | A0A1E5VDB9_9POAL; NAC domain-containing protein 43 | ||||
STRING | Pavir.J07835.1.p | 1e-164 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1597 | 38 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 4e-94 | NAC family protein |