PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462941488
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YC
Protein Properties Length: 219aa    MW: 24375.8 Da    PI: 6.6659
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462941488genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC49.68.4e-1681121138
      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkm 38 
                ql++fw+++   ie++tdfknh+lPlarikki+kadedv+m
  462941488  81 QLQQFWAERladIEQTTDFKNHSLPLARIKKIMKADEDVRM 121
                89*****98888***************************99 PP
2NF-YC582.1e-1812216262102
      NF-YC  62 swlhaeenkrrtlkksdiaaavtrtdifdflvdivprdelk 102
                sw+h+eenkrrtl+k+diaaa+trtdi+dflvdivprd++k
  462941488 122 SWMHTEENKRRTLQKNDIAAAITRTDIYDFLVDIVPRDDMK 162
                9*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.14E-2048152IPR009072Histone-fold
Gene3DG3DSA:1.10.20.108.3E-1095121IPR009072Histone-fold
Gene3DG3DSA:1.10.20.105.7E-12122158IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEPSSQPQAS MGVAAGGSQV YPASAYPPAA TIAAAPAVAP AGSQPVPPFP GNQAQMSSQH  60
QLVYQQAQQF HQQLQQQQQR QLQQFWAERL ADIEQTTDFK NHSLPLARIK KIMKADEDVR  120
MSWMHTEENK RRTLQKNDIA AAITRTDIYD FLVDIVPRDD MKEEGVWIVN SPGNYCMMVH  180
RVMSPLTAAV KRCCVLLSLG FLAMYGAVST VPWNLDSCE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-3590158495NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462941488
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9391221e-133KF939122.1 Cynodon dactylon nuclear factor Y subunit C (NF-YC) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644345.13e-77nuclear transcription factor Y subunit C-4
RefseqXP_025882178.13e-77nuclear transcription factor Y subunit C-4
SwissprotQ655V53e-78NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A0D3GJP72e-78A0A0D3GJP7_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0E5502e-78A0A0E0E550_9ORYZ; Uncharacterized protein
STRINGOMERI06G22710.13e-79(Oryza meridionalis)
STRINGOBART06G24090.13e-79(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-42nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]