PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462941473 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 242aa MW: 28027.6 Da PI: 8.6844 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.5 | 7.2e-28 | 16 | 66 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien nrqvtfskRr+g+lKKA+EL vLCd++ av ifs++gkl+eys+ 462941473 16 KRIENRVNRQVTFSKRRKGLLKKAHELAVLCDVQLAVFIFSERGKLFEYSN 66 79***********************************************95 PP | |||||||
2 | K-box | 44.5 | 6.6e-16 | 159 | 223 | 12 | 76 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76 + +++l e+++L +e e+L++++R GedL+ Ls+ eL+ Leq L++ l+k+R++K++ll + 462941473 159 HRSQQLLMEMTRLTNEKEQLESNIRISTGEDLSLLSVDELNDLEQYLQSVLSKVRARKTQLLDDL 223 56789999*****************************************************9765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.09E-26 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.0E-37 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.796 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.57E-34 | 9 | 70 | No hit | No description |
PRINTS | PR00404 | 2.5E-28 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.8E-24 | 17 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-28 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-28 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.2E-14 | 160 | 235 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.016 | 161 | 242 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MLSVQVAMGR GRVELKRIEN RVNRQVTFSK RRKGLLKKAH ELAVLCDVQL AVFIFSERGK 60 LFEYSNPPCR YACLLGFLIS NILTSGMPDC HNCDDYKLQF FLPITMPVSI IQCTDMLPLT 120 GFQSMSDLIR RYEIASNTQQ LHEAHRHDQR SLLMRIALHR SQQLLMEMTR LTNEKEQLES 180 NIRISTGEDL SLLSVDELND LEQYLQSVLS KVRARKTQLL DDLRRKVLIV NHEQSHVVIQ 240 TC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-15 | 8 | 65 | 1 | 58 | MEF2C |
5f28_B | 1e-15 | 8 | 65 | 1 | 58 | MEF2C |
5f28_C | 1e-15 | 8 | 65 | 1 | 58 | MEF2C |
5f28_D | 1e-15 | 8 | 65 | 1 | 58 | MEF2C |
6byy_A | 1e-15 | 8 | 66 | 1 | 59 | MEF2 CHIMERA |
6byy_B | 1e-15 | 8 | 66 | 1 | 59 | MEF2 CHIMERA |
6byy_C | 1e-15 | 8 | 66 | 1 | 59 | MEF2 CHIMERA |
6byy_D | 1e-15 | 8 | 66 | 1 | 59 | MEF2 CHIMERA |
6bz1_A | 1e-15 | 8 | 66 | 1 | 59 | MEF2 CHIMERA |
6bz1_B | 1e-15 | 8 | 66 | 1 | 59 | MEF2 CHIMERA |
6bz1_C | 1e-15 | 8 | 66 | 1 | 59 | MEF2 CHIMERA |
6bz1_D | 1e-15 | 8 | 66 | 1 | 59 | MEF2 CHIMERA |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462941473 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1850 | 37 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G24260.3 | 1e-29 | MIKC_MADS family protein |