PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462940706
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 724aa    MW: 79646.9 Da    PI: 4.5936
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462940706genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.11.4e-5291421128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                lp GfrFhPtdeelv +yLk k++g+ +++ evi+e+d++k+ePwdLp k  ++++++ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ ++sk   
  462940706   9 LPLGFRFHPTDEELVRHYLKGKITGQINSEVEVIPEIDVCKCEPWDLPdKsLIRSDDQEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRVIKSKgdk 108
                699************************9999****************96347788999**************************************9876 PP

        NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 k++ +g+kktLvf++grapkge+t W+mheyr 
  462940706 109 rKQHIIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142
                66666***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-593163IPR003441NAC domain
PROSITE profilePS5100557.4249163IPR003441NAC domain
PfamPF023652.0E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MTVMELKALP LGFRFHPTDE ELVRHYLKGK ITGQINSEVE VIPEIDVCKC EPWDLPDKSL  60
IRSDDQEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIKSKGDKRK QHIIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FHKQVEKTER PSPEEMDRSG  180
YSPTPSRSSP DNMEPNEEAH TPLNKESPES ALHDSPINLP ASTVEAHAVP VTMWLADRTD  240
NLAANAVNVP QMPFNGHLDG VAKVDPSAAG LALIDSKVQH GDPNVFVPGS ASILPHEGNG  300
HFPDFHQGIF GFDGNTNAHD ALDDFLIKTL GDDEHSSTTS KVQYDSDNGI MPLEFENYGH  360
MQGELLDDQS WWADLSFMPD EPNPQLSGLY ENTPCLPYDT TDQDILSMDS GAESLHDLFS  420
NMEDSSGKKD VWSNEPALQG TGITVMPRHV QSSVQPNSFL AHQGIAPRRL RLQECLSPNV  480
QSGESVTNVD CEDETSCIVN SKYLDEAVEE STADKGVPSD EDDAESTGII IRSRHPALSS  540
SAGGSFTQQG TAVEDDAEST GINIRSRHPA QSSSAAGSFA QQGTATRRLR LQSDLKTGPC  600
STTDDSSSCI IDETESQHNA RTSEIEDDDA GTNFAESVDL SGRSHDDEIK TMPEQDDLKA  660
VPEAKSVLRL RKSPEKSDKD MKQEDGVDSL VRAPGPKGGF RSHIMVTVTV ALLLLLGVGV  720
YGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-46816419169NAC domain-containing protein 19
3swm_B1e-46816419169NAC domain-containing protein 19
3swm_C1e-46816419169NAC domain-containing protein 19
3swm_D1e-46816419169NAC domain-containing protein 19
3swp_A1e-46816419169NAC domain-containing protein 19
3swp_B1e-46816419169NAC domain-containing protein 19
3swp_C1e-46816419169NAC domain-containing protein 19
3swp_D1e-46816419169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462940706
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820792.10.0protein NTM1-like 9
TrEMBLA0A0A9CTY00.0A0A0A9CTY0_ARUDO; Uncharacterized protein
STRINGPavir.Fb00405.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.12e-73NAC 014