PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462940518 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | GRAS | ||||||||
Protein Properties | Length: 575aa MW: 65752.4 Da PI: 8.4628 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 366.1 | 5e-112 | 202 | 573 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l+ lL++cA+a++s+d + a++lL+++++++ p+gd +qR+aayf+ +L+arla+++s+++k+l ++t+ + + l+a++lf ++P+ ++++ Nq 462940518 202 LRALLIQCAQAIASNDCRFASQLLKKIRNHSCPSGDGFQRMAAYFADGLEARLAGTGSQMCKKLMGTRTR---VRDMLKAYRLFIAACPFTRVAYYFSNQ 298 5789************************************************************999998...9************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +I++ +eg r+HiiDf+i+ G+QWp+L+q +a+ ++gpp+lRiTg++ pe+g +++eetg+rLa++A+ ++vpf+++ +a+r+e++++e++++++ 462940518 299 TIVDVLEGRPRLHIIDFGIMFGFQWPSLIQRFAKLDGGPPKLRITGIDVPETGfrPGKKIEETGKRLAEYAKMFNVPFQYQG-IASRWENISIEDINLDK 397 ***************************************************9999***************************.7**************** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 +E+l++n+ +++++l de +++s+rd+vL+ +++++P+v+++ + +++s+ Fl rf e l ys+lfd+l++++++++e+ri++Er +lg ++ nvv 462940518 398 DEVLIINCLHRMQNLGDEAEDMDSARDKVLRDMRKMNPEVLIIGIMNGSYSSPFFLPRFKEVLFNYSSLFDMLNTTVAKNHEARIMIERDILGADVLNVV 497 **************************************************************************************************** PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 acegaer er e++++Wr+r +aG+k++p+++ + k ++ + + + ++e++g+l++gWk+r L ++S+W+ 462940518 498 ACEGAERSERPESYKQWRMRCLKAGLKQLPVNQAILKRSTEGKEELYHEDFIINEDNGWLLQGWKGRILHALSSWK 573 *****************************************999999899*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.133 | 176 | 553 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-109 | 202 | 573 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MEKPFYDILG QAYPSSSRDT LISSESQINF PNCINNYCRD QSCSGSIISD SHVPNVTKVI 60 DTYWASELDN AIFQFNRGAE EAKKLVPSVK KLVIDIESND LFASKTMTGV TTGQQSKHVN 120 RIRSHPNVDL ELLEERRSKQ SAISTCETIR DETFDRVLLC DWQLRREICH LRKMKAKEPH 180 KCPQSKGYNQ GQDKQQKEAV DLRALLIQCA QAIASNDCRF ASQLLKKIRN HSCPSGDGFQ 240 RMAAYFADGL EARLAGTGSQ MCKKLMGTRT RVRDMLKAYR LFIAACPFTR VAYYFSNQTI 300 VDVLEGRPRL HIIDFGIMFG FQWPSLIQRF AKLDGGPPKL RITGIDVPET GFRPGKKIEE 360 TGKRLAEYAK MFNVPFQYQG IASRWENISI EDINLDKDEV LIINCLHRMQ NLGDEAEDMD 420 SARDKVLRDM RKMNPEVLII GIMNGSYSSP FFLPRFKEVL FNYSSLFDML NTTVAKNHEA 480 RIMIERDILG ADVLNVVACE GAERSERPES YKQWRMRCLK AGLKQLPVNQ AILKRSTEGK 540 EELYHEDFII NEDNGWLLQG WKGRILHALS SWKPQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-51 | 194 | 575 | 11 | 381 | Protein SCARECROW |
5b3h_A | 3e-51 | 194 | 575 | 10 | 380 | Protein SCARECROW |
5b3h_D | 3e-51 | 194 | 575 | 10 | 380 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462940518 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440450.2 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A1B6P5S1 | 0.0 | A0A1B6P5S1_SORBI; Uncharacterized protein | ||||
STRING | Sb09g001140.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-159 | GRAS family protein |