PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462940518
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 575aa    MW: 65752.4 Da    PI: 8.4628
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462940518genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.15e-1122025731374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l+ lL++cA+a++s+d + a++lL+++++++ p+gd +qR+aayf+ +L+arla+++s+++k+l  ++t+   + + l+a++lf  ++P+ ++++   Nq
  462940518 202 LRALLIQCAQAIASNDCRFASQLLKKIRNHSCPSGDGFQRMAAYFADGLEARLAGTGSQMCKKLMGTRTR---VRDMLKAYRLFIAACPFTRVAYYFSNQ 298
                5789************************************************************999998...9************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                +I++ +eg  r+HiiDf+i+ G+QWp+L+q +a+ ++gpp+lRiTg++ pe+g    +++eetg+rLa++A+ ++vpf+++  +a+r+e++++e++++++
  462940518 299 TIVDVLEGRPRLHIIDFGIMFGFQWPSLIQRFAKLDGGPPKLRITGIDVPETGfrPGKKIEETGKRLAEYAKMFNVPFQYQG-IASRWENISIEDINLDK 397
                ***************************************************9999***************************.7**************** PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                +E+l++n+ +++++l de  +++s+rd+vL+ +++++P+v+++   + +++s+ Fl rf e l  ys+lfd+l++++++++e+ri++Er +lg ++ nvv
  462940518 398 DEVLIINCLHRMQNLGDEAEDMDSARDKVLRDMRKMNPEVLIIGIMNGSYSSPFFLPRFKEVLFNYSSLFDMLNTTVAKNHEARIMIERDILGADVLNVV 497
                **************************************************************************************************** PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                acegaer er e++++Wr+r  +aG+k++p+++ + k      ++ + + + ++e++g+l++gWk+r L ++S+W+
  462940518 498 ACEGAERSERPESYKQWRMRCLKAGLKQLPVNQAILKRSTEGKEELYHEDFIINEDNGWLLQGWKGRILHALSSWK 573
                *****************************************999999899*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.133176553IPR005202Transcription factor GRAS
PfamPF035141.7E-109202573IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MEKPFYDILG QAYPSSSRDT LISSESQINF PNCINNYCRD QSCSGSIISD SHVPNVTKVI  60
DTYWASELDN AIFQFNRGAE EAKKLVPSVK KLVIDIESND LFASKTMTGV TTGQQSKHVN  120
RIRSHPNVDL ELLEERRSKQ SAISTCETIR DETFDRVLLC DWQLRREICH LRKMKAKEPH  180
KCPQSKGYNQ GQDKQQKEAV DLRALLIQCA QAIASNDCRF ASQLLKKIRN HSCPSGDGFQ  240
RMAAYFADGL EARLAGTGSQ MCKKLMGTRT RVRDMLKAYR LFIAACPFTR VAYYFSNQTI  300
VDVLEGRPRL HIIDFGIMFG FQWPSLIQRF AKLDGGPPKL RITGIDVPET GFRPGKKIEE  360
TGKRLAEYAK MFNVPFQYQG IASRWENISI EDINLDKDEV LIINCLHRMQ NLGDEAEDMD  420
SARDKVLRDM RKMNPEVLII GIMNGSYSSP FFLPRFKEVL FNYSSLFDML NTTVAKNHEA  480
RIMIERDILG ADVLNVVACE GAERSERPES YKQWRMRCLK AGLKQLPVNQ AILKRSTEGK  540
EELYHEDFII NEDNGWLLQG WKGRILHALS SWKPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5119457511381Protein SCARECROW
5b3h_A3e-5119457510380Protein SCARECROW
5b3h_D3e-5119457510380Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462940518
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440450.20.0scarecrow-like protein 9
TrEMBLA0A1B6P5S10.0A0A1B6P5S1_SORBI; Uncharacterized protein
STRINGSb09g001140.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-159GRAS family protein