PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462939980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 245aa MW: 27301.3 Da PI: 8.3057 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.5 | 1.9e-24 | 45 | 91 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 rien rqvtf+kRr+g+lKKA ELSvLCda + +iifs +gkly+ 462939980 45 RIENPVHRQVTFCKRRAGLLKKARELSVLCDAHIGIIIFSAHGKLYD 91 8********************************************97 PP | |||||||
2 | K-box | 28.5 | 6.5e-11 | 124 | 195 | 16 | 86 |
K-box 16 slqqelakLkkeienLqreqRhllGedLe.sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 +qe L++ei+ Lq+ +R + G+ + ++++eL+ Le+ Le + +iRs K+ +l++ e lq+k e 462939980 124 DPKQETMVLQQEINLLQKGLRYIYGNRANeHMTVEELNALERYLEIWMYNIRSAKEGMLKAANEILQEKIVE 195 5689999******************998626************************************99765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.352 | 36 | 96 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.1E-35 | 36 | 95 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.19E-27 | 36 | 111 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.80E-39 | 37 | 114 | No hit | No description |
PRINTS | PR00404 | 5.2E-26 | 38 | 58 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 38 | 92 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.0E-23 | 45 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-26 | 58 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-26 | 73 | 94 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.549 | 122 | 212 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 6.0E-12 | 125 | 192 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
PRVEAQGTAA TSKLVQTSGR LSAGGRGRRS YLVTSMARGK VQLRRIENPV HRQVTFCKRR 60 AGLLKKAREL SVLCDAHIGI IIFSAHGKLY DLATTGTMEE LIERYKTASG EAQQGDGCGD 120 QIMDPKQETM VLQQEINLLQ KGLRYIYGNR ANEHMTVEEL NALERYLEIW MYNIRSAKEG 180 MLKAANEILQ EKIVEQSGLL DVGMMVADQQ NGHFSTVPLI EEITNPLTIL SGYSSCRGSE 240 MGYSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-16 | 36 | 105 | 1 | 69 | MEF2C |
5f28_B | 6e-16 | 36 | 105 | 1 | 69 | MEF2C |
5f28_C | 6e-16 | 36 | 105 | 1 | 69 | MEF2C |
5f28_D | 6e-16 | 36 | 105 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462939980 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972486.1 | 1e-145 | MADS-box transcription factor 26 | ||||
Swissprot | A2YQK9 | 1e-141 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 1e-141 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A0A0A9TEC7 | 1e-144 | A0A0A9TEC7_ARUDO; Uncharacterized protein | ||||
STRING | Si014419m | 1e-144 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 2e-51 | AGAMOUS-like 12 |
Publications ? help Back to Top | |||
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