PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462939971

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 358aa MW: 39578.5 Da PI: 9.603

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462939971	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.3	6.5e-49	28	153	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 +pGfrFhPt+eel+++yL+++vegk++++ e i+ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+ v +++++ +g 462939971 28 MPGFRFHPTEEELIDFYLRRRVEGKRFNI-ELINLVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMVRVEGNRSIG 126 79*************************.89***********888889******************************************* PP NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 lkktLvfy g+apkg +++W+m+eyrl 462939971 127 LKKTLVFYVGKAPKGLRSSWIMNEYRL 153 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.246	27	173	IPR003441	NAC domain
SuperFamily	SSF101941	7.19E-56	27	173	IPR003441	NAC domain
Pfam	PF02365	6.0E-24	29	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MGGDHHHNDM AARGAGGDDG QAAHDMVMPG FRFHPTEEEL IDFYLRRRVE GKRFNIELIN 60 LVDLYRYDPW DLPALASIGD KEWFFYVPRD RKYRNGDRPN RVTPSGYWKA TGADRMVRVE 120 GNRSIGLKKT LVFYVGKAPK GLRSSWIMNE YRLPHGEADR YQKEISLCRV YKRPGIEDNF 180 HLTGTTTRSS GSKAAATMDK KHRTSASPRL APVFDGGHSS GLMNKPYNGT SNGGLTSSAA 240 APAATMALHT SMFRSTGSVA SLSSTTSTEE DGTSLYHLKG ANPMLPSSTH ALLNANSTTM 300 ATIPIDELSR AIGSYNNNQG NPNQPLPSQG PLHPFPSMEK IWDWNPLLES PKVCTSFK

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MGGDHHHNDM AARGAGGDDG QAAHDMVMPG FRFHPTEEEL IDFYLRRRVE GKRFNIELIN  60
LVDLYRYDPW DLPALASIGD KEWFFYVPRD RKYRNGDRPN RVTPSGYWKA TGADRMVRVE  120
GNRSIGLKKT LVFYVGKAPK GLRSSWIMNE YRLPHGEADR YQKEISLCRV YKRPGIEDNF  180
HLTGTTTRSS GSKAAATMDK KHRTSASPRL APVFDGGHSS GLMNKPYNGT SNGGLTSSAA  240
APAATMALHT SMFRSTGSVA SLSSTTSTEE DGTSLYHLKG ANPMLPSSTH ALLNANSTTM  300
ATIPIDELSR AIGSYNNNQG NPNQPLPSQG PLHPFPSMEK IWDWNPLLES PKVCTSFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-53	29	173	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-53	29	173	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-53	29	173	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-53	29	173	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	8e-53	29	173	22	168	NAC domain-containing protein 19
3swm_B	8e-53	29	173	22	168	NAC domain-containing protein 19
3swm_C	8e-53	29	173	22	168	NAC domain-containing protein 19
3swm_D	8e-53	29	173	22	168	NAC domain-containing protein 19
3swp_A	8e-53	29	173	22	168	NAC domain-containing protein 19
3swp_B	8e-53	29	173	22	168	NAC domain-containing protein 19
3swp_C	8e-53	29	173	22	168	NAC domain-containing protein 19
3swp_D	8e-53	29	173	22	168	NAC domain-containing protein 19
4dul_A	6e-53	29	173	19	165	NAC domain-containing protein 19
4dul_B	6e-53	29	173	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462939971

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973013.1	0.0	NAC domain-containing protein 35
Swissprot	Q9ZVP8	1e-95	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A1E5V4Y2	0.0	A0A1E5V4Y2_9POAL; NAC domain-containing protein 35
STRING	Pavir.J38855.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7706	36	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	2e-96	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]