PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462938387
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 629aa    MW: 69768.4 Da    PI: 6.4091
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462938387genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65e-07513560347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +WT  E  +lvd+v+++G g W+ I +        Rt  ++k++w+++
        462938387 513 AWTLCEVMKLVDGVALYGAGKWSEIRKAAFstySYRTSVDLKDKWRNL 560
                      7*************************999899989***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.448506565IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-11508564IPR009057Homeodomain-like
SuperFamilySSF466894.37E-14508563IPR009057Homeodomain-like
SMARTSM007174.9E-7510563IPR001005SANT/Myb domain
CDDcd116603.09E-17512562No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MEVDGLHDAL LNKCEENEFE KKGGSDPVIY QLVRVEGDGT LIPATEDDVL QFEHFLHDEK  60
VDLPSIEDVG HAEELFSNDC MLLKKSDLED GSSKLETTEV GKKLMCAALE ESSLQSLDDS  120
LSPPSKCTAV HDQQPDKLHP EQGDNNITQQ ENASTETAKS TVLNDSFIAE KDRADACSRP  180
ADDTCTGQTD SRVTSSVPDF SILRGEVCLD DLTIRELQEA FRATFGRQTS VKDKIWLKRR  240
ITMGLTNSCD VPSSGCVVKN YKIFGKDGKQ MIPNTEERPE VELHAISLVR DQVISPVNEI  300
NSSSSSYYQS DDQQGSSKRL KRVPITNDEQ QGNLLAEQST SKRTRKPTKR FIEEVSDIET  360
RDSTGKLSSP AKRAAHDEML LKQWVTPFHD VGSLRTSYPT RKDTLGGLSV HVPYVSRMRR  420
GRPRKDFISF VDKKPSVECS EAQATEGVML KKDGEEGNHV RKAFEATPMA NASKGDHLEA  480
LDNKGVQKLQ TNAYIAATKP KINRGFTRKH HRAWTLCEVM KLVDGVALYG AGKWSEIRKA  540
AFSTYSYRTS VDLKDKWRNL IRASQTQLPT LTDGGCPRKT NPSIVPIPAS ILLRVKELNE  600
LQSPGGGFTS PVKFSGPKSD DVQKGSGFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1418424RRGRPRK
2418425RRGRPRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMap462938387
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954093.10.0uncharacterized protein LOC101768713 isoform X1
TrEMBLA0A3L6QDN40.0A0A3L6QDN4_PANMI; Uncharacterized protein
TrEMBLA0A3L6RW430.0A0A3L6RW43_PANMI; Uncharacterized protein
STRINGPavir.Aa00316.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-80TRF-like 6