PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462937971 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | DBB | ||||||||
Protein Properties | Length: 199aa MW: 21681.8 Da PI: 8.7582 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.7 | 3.6e-06 | 98 | 139 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e e++ C ++ lC+ C H H + 462937971 98 VLCSACEAAEARVLCCADEAALCARCDRDVHAAnrlagkHHR 139 57******99*******************9955677888554 PP | |||||||
2 | zf-B_box | 27.4 | 6.8e-09 | 150 | 191 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 ++ C+ ++e ++ +fC +++ llC++C ++ Hk H+ 462937971 150 APSCDICQECHAYFFCVEDRALLCRSCDVAVHKAnafvsaHR 191 5789***9988*********************8766666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.708 | 95 | 142 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.0E-10 | 95 | 142 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.34E-5 | 98 | 142 | No hit | No description |
SMART | SM00336 | 6.2E-12 | 148 | 195 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.0E-7 | 150 | 190 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.92E-7 | 151 | 195 | No hit | No description |
PROSITE profile | PS50119 | 9.172 | 153 | 195 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MKRRRIRVSL AAFTTPAFER NICTAGGGRL PLTSQPPGGR EGRDADRTHR DPSRQPTSAS 60 DKTASSSSPI HSHPSIHPVH GGRPRRRTLT ELVDEMKVLC SACEAAEARV LCCADEAALC 120 ARCDRDVHAA NRLAGKHHRL PLLPPAAVTA PSCDICQECH AYFFCVEDRA LLCRSCDVAV 180 HKANAFVSAH RRFLLTGVQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1 | 5 | KRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462937971 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042480 | 1e-133 | BT042480.1 Zea mays full-length cDNA clone ZM_BFb0287P19 mRNA, complete cds. | |||
GenBank | BT064277 | 1e-133 | BT064277.1 Zea mays full-length cDNA clone ZM_BFc0155A07 mRNA, complete cds. | |||
GenBank | BT066855 | 1e-133 | BT066855.1 Zea mays full-length cDNA clone ZM_BFb0081H14 mRNA, complete cds. | |||
GenBank | EU964364 | 1e-133 | EU964364.1 Zea mays clone 278314 B-box zinc finger family protein mRNA, complete cds. | |||
GenBank | HQ858800 | 1e-133 | HQ858800.1 Zea mays clone UT1887 ORPHAN transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001266566.2 | 2e-61 | ORPHAN transcription factor | ||||
Swissprot | Q9SYM2 | 5e-44 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | A0A0A9CG96 | 2e-63 | A0A0A9CG96_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Eb00238.1.p | 4e-62 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1794 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 4e-44 | light-regulated zinc finger protein 1 |