PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462937948
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 269aa    MW: 30022.1 Da    PI: 4.7297
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462937948genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92.1e-172794146
                     TSSS-HHHHHHHHHHHHHTTTT.......................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.......................tWktIartmgkgRtlkqcksrwqk 46
                     rg+WT +Ed+ lv++++ +G g                       +W++Ia++++ gRt++++k++w++
        462937948 27 RGPWTVDEDLALVNYITDHGEGrwnslaqaaascnfisplddrsiRWSKIAQHLP-GRTDNEIKNYWRT 94
                     89*****************************************************.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-2022102IPR009057Homeodomain-like
PROSITE profilePS5129415.27522100IPR017930Myb domain
SuperFamilySSF466894.21E-132492IPR009057Homeodomain-like
SMARTSM007178.3E-152698IPR001005SANT/Myb domain
PfamPF002491.1E-52755IPR001005SANT/Myb domain
CDDcd001671.03E-102994No hitNo description
PfamPF002491.4E-77294IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MASSRSSRSS GSPDEEAGAA REPELRRGPW TVDEDLALVN YITDHGEGRW NSLAQAAASC  60
NFISPLDDRS IRWSKIAQHL PGRTDNEIKN YWRTRVQKHA KQLNCDADSR RFKDAMRYLW  120
MPHLVDVDAA HHRSLHFAGD QDPYTSAAAA IDVHAMSGMA LTSSSSTDSF ATTTSEYSYD  180
AVPMMKKWEP TTTAYDCEGL YANVRAGEML VNGGDWAQET NQAAGMWCDQ KAQVNGAPIE  240
DPELSGWVQS FSEGATENFW TLEDIWKMQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462937948
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4741293e-55AF474129.1 Sorghum bicolor typical P-type R2R3 Myb protein (Myb42) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962755.11e-84transcription factor JAMYB
TrEMBLK3Z8G13e-83K3Z8G1_SETIT; Uncharacterized protein
STRINGSi022831m4e-84(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-44myb domain protein 78