PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462937858
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 636aa    MW: 66631.6 Da    PI: 9.6721
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462937858genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.63e-29284341260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                +Dgy+WrK GqK+vk se+prsYY+Ct+++C+vkkkvers+ +++v+ei+Y+g+Hnh+k
  462937858 284 EDGYSWRKSGQKQVKHSEYPRSYYKCTHPNCQVKKKVERSH-EGHVTEIIYKGTHNHPK 341
                8****************************************.***************85 PP
2WRKY104.94.2e-33403461159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  462937858 403 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 461
                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-26277342IPR003657WRKY domain
PROSITE profilePS5081121.563278342IPR003657WRKY domain
SuperFamilySSF1182907.59E-24280342IPR003657WRKY domain
SMARTSM007741.0E-30283341IPR003657WRKY domain
PfamPF031061.6E-22284340IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.7E-35395463IPR003657WRKY domain
SuperFamilySSF1182901.31E-28397463IPR003657WRKY domain
PROSITE profilePS5081137.539398463IPR003657WRKY domain
SMARTSM007744.0E-38403462IPR003657WRKY domain
PfamPF031062.5E-25404461IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MDGGPEGLMP GTLTGAFPPD TKGGHGNEGA KTGFGEHGFS VATSSPQEGG RSLPGTPQFG  60
QKAGASCSLA ERMQARAGFR VPKLNMPFGT AAGADTAVSG APSPYLTIPP GLSPATLLES  120
PVFLSNTMGQ ASPTTGKLFM LGGTNDSNPN RFEGPPQGDG PGAFSFKPLD LRSSHYIVEE  180
KKESSRNNQH SSLPSTQVSI KTETKVQTAQ EASIPRQLNQ QQLNDGQTTL KSSSHGSNKL  240
SRLAPDAAAV AEHVSPPDHG QPAEEGDARG DFTTALATAA APAEDGYSWR KSGQKQVKHS  300
EYPRSYYKCT HPNCQVKKKV ERSHEGHVTE IIYKGTHNHP KPAQSRRPGV PPVHPFGDAP  360
ADASDNPGEA RHPWHNGAGV HDLRGDGVDA TSSPSTTSEV DILDDGYRWR KYGQKVVKGN  420
PNPRSYYKCT HPGCSVRKHV ERASHDLKSV ITTYEGKHNH EVPAARNSGH PTSAASGGAA  480
AMAGAAGQHH AGARRPEHHH HSVQDGLMRL GGCAFGLPPP RXPPMPAGLG GVQGLKLPML  540
APPLPHPLLR HRQAMEAAGL VAAPKAAEVK REAGTGGNNG AGAAAAVQGG GGGEARGGRR  600
QRQPRRRRCG RGRVPADDAA QQAAAGPPDV DNKNED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-35284464178Probable WRKY transcription factor 4
2lex_A2e-35284464178Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462937858
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277361e-102KJ727736.1 Zea mays clone pUT5677 WRKY transcription factor (WRKY59) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823122.11e-169probable WRKY transcription factor 2
TrEMBLA0A1E5WCK31e-175A0A1E5WCK3_9POAL; Putative WRKY transcription factor 2
STRINGPavir.J36042.1.p1e-172(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.22e-65WRKY DNA-binding protein 26