PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462937525

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 302aa MW: 33308.8 Da PI: 7.3891

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462937525	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.6	1.7e-51	14	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 lppGfrF+Ptd+e++v+yLkkk++g++ +++++i++vdiyk++Pw+Lp+k++ ++ ew+fFs+r++ky++g r+nr++ sgyWkatg+dk++l++ + + 462937525 14 LPPGFRFQPTDQEMIVCYLKKKIAGTSSSVTSIIADVDIYKFDPWELPEKATFGDGEWFFFSPRERKYPNGARPNRTAGSGYWKATGTDKPILAAqaEAK 113 79**************************999***********98889999*********************************9855556 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfy+gr+pkg+kt+W+mheyrl 462937525 114 CLGVKKALVFYQGRSPKGTKTEWLMHEYRL 143 69************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-58	10	187	IPR003441	NAC domain
PROSITE profile	PS51005	58.108	14	187	IPR003441	NAC domain
Pfam	PF02365	2.4E-25	15	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MEEGAGLVFR GCQLPPGFRF QPTDQEMIVC YLKKKIAGTS SSVTSIIADV DIYKFDPWEL 60 PEKATFGDGE WFFFSPRERK YPNGARPNRT AGSGYWKATG TDKPILAAQA EAKCLGVKKA 120 LVFYQGRSPK GTKTEWLMHE YRLLDTGNHT TSSSMRLAME SCMDPWIELM ISYMQLDEWV 180 LCRVRNKAAG CVSSSQLGPS SEDMAPPVAV APASNIDWTT DDDGHLLRYL IGGGDALSSS 240 CTDHHVQAVT SSVLESIQRK LSFQAIDELY LLQPATKRAV RPTTASSTTP TTKRPWTASS 300 TS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-63	14	189	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-63	14	189	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-63	14	189	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-63	14	189	17	167	NO APICAL MERISTEM PROTEIN
3swm_A	4e-63	14	189	20	170	NAC domain-containing protein 19
3swm_B	4e-63	14	189	20	170	NAC domain-containing protein 19
3swm_C	4e-63	14	189	20	170	NAC domain-containing protein 19
3swm_D	4e-63	14	189	20	170	NAC domain-containing protein 19
3swp_A	4e-63	14	189	20	170	NAC domain-containing protein 19
3swp_B	4e-63	14	189	20	170	NAC domain-containing protein 19
3swp_C	4e-63	14	189	20	170	NAC domain-containing protein 19
3swp_D	4e-63	14	189	20	170	NAC domain-containing protein 19
4dul_A	4e-63	14	189	17	167	NAC domain-containing protein 19
4dul_B	4e-63	14	189	17	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462937525

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971462.1	1e-111	NAC transcription factor 32
Swissprot	A2YMR0	4e-71	NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBL	A0A2Z5E009	1e-110	A0A2Z5E009_SETIT; NAC domain transcriptional regulator
TrEMBL	K3XQK9	1e-109	K3XQK9_SETIT; NAC domain transcriptional regulator
STRING	Si004195m	1e-110	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13797	19	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	6e-68	NAC domain containing protein 47