PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462937067
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 577aa    MW: 62561.7 Da    PI: 8.9387
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462937067genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-14106145848
                      HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      Ed++++d+vk++G+  W+ Iar ++ gR +kqc++rw+++l
        462937067 106 EDDKIIDLVKKYGPTKWSVIARSLP-GRIGKQCRERWHNHL 145
                      9************************.*************97 PP
2Myb_DNA-binding57.72.7e-18151194146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT+eE+  l++a++ +G++ W+ Ia+ ++ gRt++++k++w++
        462937067 151 KDAWTPEEERALINAHRVYGNK-WAEIAKVLP-GRTDNSIKNHWNS 194
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.1488145IPR017930Myb domain
SMARTSM007171.2E-998147IPR001005SANT/Myb domain
PfamPF002497.6E-13106145IPR001005SANT/Myb domain
CDDcd001678.52E-13106145No hitNo description
Gene3DG3DSA:1.10.10.601.6E-23106152IPR009057Homeodomain-like
SuperFamilySSF466891.54E-29124204IPR009057Homeodomain-like
PROSITE profilePS5129429.028146200IPR017930Myb domain
SMARTSM007174.7E-18150198IPR001005SANT/Myb domain
PfamPF002491.3E-16151194IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-24153200IPR009057Homeodomain-like
CDDcd001678.90E-15153196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MVAMAEAVQE GCVENRQPLA ASSSSVSDGS SCGGGGRAGM SPPVSSSANS ISGLRRTSGP  60
IRRAKGGWTP EELNTFLIGQ RYNACIDGKR FLILSLSKAL GLKRFEDDKI IDLVKKYGPT  120
KWSVIARSLP GRIGKQCRER WHNHLNPDIR KDAWTPEEER ALINAHRVYG NKWAEIAKVL  180
PGRTDNSIKN HWNSSLRKKL DVYSPTNVLA VPKLFGRDEF KDKMKPVATE NHLDLNIMPR  240
VGSKDFPGIA HRSNMSPLSQ AYKSEAIKDC SGFLSLSIST AQPPTSYEMS SLVDGSAVTL  300
AVQGRESDSV RDKGLEFDSF HEKGIEVSST PGPVGEVCTI QLESARAGSG LESSLKNELH  360
STLGPLCYKT LDMKDVDSVS SPPRSEHHSA HQITHEGLMS PNGFTSPSPT GLTVDSILKN  420
AADSFPGTPS ILRRRKRDKS TPASDSELKI GGGTTDSFFT PNGKGTTTDT PRSFKTASFL  480
SLAPLDGLLT SVRSCDTSPP YQIRSKRMAA MKTVSHHLDF SVDGLDTSGS EILNSPCDKS  540
QGANSITEAL RLQAKELNEH ELISILRSMM GHKCLPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-4510620011105C-Myb DNA-Binding Domain
1msf_C1e-4510620011105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1433438RRKRDK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462937067
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970536.10.0transcription factor MYB3R-2
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A368RD030.0A0A368RD03_SETIT; Uncharacterized protein
TrEMBLK3XG230.0K3XG23_SETIT; Uncharacterized protein
STRINGSi000842m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.23e-66myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]