PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462936754
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 470aa    MW: 52458.2 Da    PI: 6.0408
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462936754genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-17177223148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WTteEd +lv++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l
        462936754 177 KGQWTTEEDRKLVKLVEQFGLRKWSCIAQILP-GRVGKQCRERWHNHL 223
                      799*****************************.*************97 PP
2Myb_DNA-binding55.51.3e-17229271145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W+ eEd+ l++a+k+ G++ W+ Ia++++ gRt++++k++w+
        462936754 229 KDVWSDEEDKVLIQAHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 271
                      578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.389172227IPR017930Myb domain
SuperFamilySSF466897.91E-31174270IPR009057Homeodomain-like
SMARTSM007175.4E-14176225IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-28178230IPR009057Homeodomain-like
CDDcd001675.24E-14180223No hitNo description
PfamPF139215.6E-16180233No hitNo description
PROSITE profilePS5129420.926228278IPR017930Myb domain
SMARTSM007174.6E-17228276IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-22231276IPR009057Homeodomain-like
CDDcd001672.39E-13232274No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MPGWSSTRAR AAHLLVEGDG DKVTKTPMIL DEEEGKEEAS DWVLKPCSAM ELIRAGVKMS  60
SMFLDHDLQN GFCELNPVDR QFEGIGEYTS SGPMVPSATF NDLGHHYYSG RKSEGPGIDH  120
ASFVDQKVGF YLPLLTPKSE ISLQMGSVPG PYKAYEMNNR FVPRKKDLSL KKTNVVKGQW  180
TTEEDRKLVK LVEQFGLRKW SCIAQILPGR VGKQCRERWH NHLRPNIKKD VWSDEEDKVL  240
IQAHKEVGNK WAEIAKRLPG RTENSIKNHW NATKRRQFAR RRSRTSSKNP KSGTLLQNYI  300
KSLGIGPIKS GAPLVQPTPS PPSPAKPAKF NNDESLEHNQ SDTLDSQGML GSIHKKSCGE  360
THCCEELISP ACDDFSVDMC DGLFDTEKEA AFQVYSVDDE VGINYIFNHL EYTVDVDEVI  420
DMDMTWDDDA LGCVEPGAAA QSKVVHAKEE MGLVEMVAAA TQNCAGQENN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-441752782105C-Myb DNA-Binding Domain
1msf_C3e-441752782105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462936754
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986186.30.0transcription factor MYB115
TrEMBLA0A1E5V2V30.0A0A1E5V2V3_9POAL; Transcription factor MYB98
STRINGPavir.J02497.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-62myb domain protein 98