PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462936521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | HSF | ||||||||
Protein Properties | Length: 162aa MW: 18663.5 Da PI: 12.3453 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 105.6 | 4.2e-33 | 25 | 117 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F+ k+y+++ d++++ +++w +++nsfvv+d+ f++ +Lp +Fkh nf+SFvRQLn+YgF+kv+ ++ weF+h+sF +g+++ll +i 462936521 25 FVAKTYQMVCDPRTDAFVRWGRENNSFVVVDPAGFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFLRGQTHLLPRIV 112 9********************999*****************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r++++ 462936521 113 RRQKR 117 **985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 4.9E-49 | 21 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.5E-35 | 23 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.08E-33 | 23 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.6E-16 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.2E-29 | 25 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-16 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 64 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-16 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MDGLHTELAL GLIRFGGAGG AGAPFVAKTY QMVCDPRTDA FVRWGRENNS FVVVDPAGFS 60 QLLLPCFFKH GNFSSFVRQL NTYGFRKVHP DRWEFAHESF LRGQTHLLPR IVRRQKRRRA 120 SPATVPITTI IRTTRRRRRR RWHLRCSGCG RSRRPSGRSW PG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-23 | 16 | 114 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-23 | 16 | 114 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-23 | 16 | 114 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 138 | RRRASPATVPITTIIRTTRRRRR |
2 | 131 | 140 | RTTRRRRRRR |
3 | 134 | 140 | RRRRRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462936521 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069479 | 1e-120 | AK069479.1 Oryza sativa Japonica Group cDNA clone:J023019J23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636084.1 | 6e-70 | heat stress transcription factor C-1a | ||||
Swissprot | Q6VBA4 | 5e-71 | HFC1A_ORYSJ; Heat stress transcription factor C-1a | ||||
TrEMBL | A0A0D9V342 | 7e-69 | A0A0D9V342_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G20050.1 | 1e-69 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 2e-43 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
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