PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462936314 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 139aa MW: 15932.1 Da PI: 11.0473 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 31.4 | 5.6e-10 | 1 | 27 | 102 | 128 |
NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 +kkt+vfy+g+ap+g+kt+W m+eyr+ 462936314 1 MKKTMVFYRGHAPSGTKTTWKMNEYRA 27 8************************95 PP | |||||||
2 | Myb_DNA-binding | 26.9 | 1.1e-08 | 80 | 116 | 11 | 47 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 l++++ +++G g+W+ I+r +Rt+ q+ s+ qky 462936314 80 LFLQGLEKYGRGDWRNISRFAVRTRTPTQVASHAQKY 116 699*********************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-10 | 1 | 67 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 15.689 | 1 | 69 | IPR003441 | NAC domain |
CDD | cd00167 | 7.61E-7 | 80 | 117 | No hit | No description |
Pfam | PF00249 | 1.3E-6 | 80 | 116 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.63E-10 | 80 | 120 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-11 | 80 | 120 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 5.3E-7 | 81 | 121 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 139 aa Download sequence Send to blast |
MKKTMVFYRG HAPSGTKTTW KMNEYRALHY HDASGADGSS SASAHAAAPL NLPPPQLRSE 60 FSLCRLYTTR PFSRCCQRWL FLQGLEKYGR GDWRNISRFA VRTRTPTQVA SHAQKYFNRQ 120 LNPASRDSKR KSIHDITTP |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462936314 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT042225 | 7e-67 | BT042225.1 Zea mays full-length cDNA clone ZM_BFb0168P15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002456680.1 | 3e-35 | transcription factor DIVARICATA | ||||
Refseq | XP_025817656.1 | 2e-35 | transcription factor DIVARICATA-like | ||||
TrEMBL | A0A1E5UTG3 | 3e-34 | A0A1E5UTG3_9POAL; Transcription factor DIVARICATA | ||||
TrEMBL | A0A3L6SN81 | 4e-34 | A0A3L6SN81_PANMI; Transcription factor DIVARICATA-like | ||||
STRING | Sb03g040730.1 | 1e-34 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2895 | 36 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58900.1 | 1e-23 | Homeodomain-like transcriptional regulator |