PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462936145 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 723aa MW: 79622.1 Da PI: 4.5803 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.8 | 3.6e-52 | 9 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lp GfrFhPtdeelv +yLk k++g+ +++ evi+e+d++k+ePwdLp k +++++ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ ++sk 462936145 9 LPLGFRFHPTDEELVRHYLKGKITGQINSEVEVIPEIDVCKCEPWDLPdKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRVIKSKgdk 108 699************************9999****************96446677888**************************************9876 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 k++ +g+kktLvf++grapkge+t W+mheyr 462936145 109 rKQHIIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142 66666***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.55E-59 | 3 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.154 | 9 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-27 | 10 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 723 aa Download sequence Send to blast |
MTVMELKKLP LGFRFHPTDE ELVRHYLKGK ITGQINSEVE VIPEIDVCKC EPWDLPDKSL 60 IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIKSKGDKRK QHIIGMKKTL 120 VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FHKTVEKTER PSPEEMDRSG 180 DSPTPSRSSP DNMEPNEEAH TPLNKESPES ALLDSPINLP ASVEAHAVPM TMWLADRTDN 240 LAPNAANVSQ MPSNGHLDGV AKVDPSAGSF PLIDSKVQHG DPNHLVPGSA SIIPHEGNGF 300 FADFHQGVSG FDGNTNAHDE LDVILNQIID PEEHSSTTSK VQYDSDTGIM PFEFENHGVM 360 QGELLDDQSW WADLSFMPDE PNPQLSGLYE NTPLLPYDTT DQDVLSMDSG AESLHDLFNN 420 MEDSSGKKDV WSNEPALQGT GITVMPRHLQ SSMQPNSFLS HQGIAPRRLR LQECLSTNVQ 480 SGESVTNVDC EDETSCIINS KHLDEAVEES TADKGVPSDE DDAESTGIII RSRRPALSSS 540 AAGLITQQGT AGEDDAESTG IIIKSRHPDQ SSSAAGLFTQ QGTATRRLRL QSDLKTGPCS 600 TTDDSSSCII DETESQHNAR TSEIEEDDAG TNFAESVDLF GSSHNDEIKN MPEHDDLKSV 660 PEAKSVLRLR KSPEKSDKDI KQEDGVDSLV RAPGPKGGFR SHIMVTVLVA LLLLLGVGIY 720 GWV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-45 | 9 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-45 | 9 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-45 | 9 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-45 | 9 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-45 | 9 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-45 | 9 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-45 | 9 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-45 | 9 | 163 | 20 | 168 | NAC domain-containing protein 19 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462936145 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820792.1 | 0.0 | protein NTM1-like 9 | ||||
TrEMBL | A0A0A9CTY0 | 0.0 | A0A0A9CTY0_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Fb00405.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5172 | 38 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.2 | 3e-71 | NAC 014 |