PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462935768 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | AP2 | ||||||||
Protein Properties | Length: 322aa MW: 34946.1 Da PI: 5.2186 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43 | 1.1e-13 | 134 | 184 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ +++g 462935768 134 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAIRFNG 184 89********.7******...5...334336**********99**********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.509 | 30 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-4 | 58 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-7 | 67 | 100 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-9 | 68 | 99 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.37E-12 | 70 | 99 | No hit | No description |
Pfam | PF00847 | 2.9E-9 | 134 | 184 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-16 | 134 | 193 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.66E-25 | 134 | 194 | No hit | No description |
PROSITE profile | PS51032 | 15.988 | 135 | 192 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-30 | 135 | 198 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-15 | 135 | 192 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-6 | 136 | 147 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-6 | 174 | 194 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MVLDLNAESP GGGEAASPTS SYAGGGGGGF FRDTGKQVYL GMFNLLVRAI FGELSALVQF 60 ADAAVPLLIG GFDTAHEAAR AYDRAAIKFR GLDADINFDL KDYEDDLKQM RNWSKEEFVH 120 ILRRQSTGFA RGSSKYRGVT LHKCGRWEAR MGQLLGKKYI YLGLFDSEIE AARAYDRAAI 180 RFNGKDSVTN FDPSCYDGDV PPDIEKDAIL DGDILDLNLR ISQPNVHHEK SDGILTGLRS 240 SCESPEASSV VSPQEAAMEE KRPETVGPPP FPPWAWQMQG FYPVPSPPAT AASSGFSTAT 300 GAGVPSTHPR QFANGYHFPP TA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462935768 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647892.1 | 1e-118 | AP2-like ethylene-responsive transcription factor TOE3 isoform X2 | ||||
Swissprot | Q8H443 | 1e-112 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | A0A0D9WX16 | 1e-123 | A0A0D9WX16_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G06910.2 | 1e-123 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2448 | 38 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 4e-68 | AP2 family protein |
Publications ? help Back to Top | |||
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