PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462935386 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 106aa MW: 11284.6 Da PI: 11.1927 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 64.2 | 2.5e-20 | 23 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEdell av+++G+++W+ I +++ gR++k+c++rw + 462935386 23 KGSWTAEEDELLRAAVARHGPRNWSVIGGEVP-GRSGKSCRLRWCNQ 68 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 23.7 | 1.2e-07 | 75 | 99 | 1 | 26 |
TSSS-HHHHHHHHHHHHHTTTT-HHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWkt 26 r ++T+eEd l+v a++++G++ W+ 462935386 75 RRAFTPEEDALIVAAHARYGNR-WRV 99 678*******************.*85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.53 | 18 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.31E-23 | 20 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-16 | 22 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-19 | 23 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 24 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.14E-16 | 25 | 67 | No hit | No description |
PROSITE profile | PS51294 | 8.776 | 75 | 106 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.0E-5 | 75 | 98 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-7 | 82 | 103 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MVDVVAGNNA GASRSGSGAG RVKGSWTAEE DELLRAAVAR HGPRNWSVIG GEVPGRSGKS 60 CRLRWCNQLS PGVERRAFTP EEDALIVAAH ARYGNRWRVT ARATGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-23 | 22 | 97 | 3 | 78 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-22 | 22 | 97 | 57 | 132 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-22 | 22 | 97 | 57 | 132 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-23 | 22 | 97 | 3 | 78 | C-Myb DNA-Binding Domain |
1msf_C | 4e-23 | 22 | 97 | 3 | 78 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462935386 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969854 | 2e-57 | EU969854.1 Zea mays clone 336503 mRNA sequence. | |||
GenBank | KJ727659 | 2e-57 | KJ727659.1 Zea mays clone pUT5586 MYB transcription factor (MYB119) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002439611.1 | 2e-45 | myb-related protein 330 | ||||
Swissprot | O23160 | 2e-35 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | C5YWC0 | 4e-44 | C5YWC0_SORBI; Uncharacterized protein | ||||
STRING | Sb09g016570.1 | 6e-45 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 2e-35 | myb domain protein 70 |
Publications ? help Back to Top | |||
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