PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462934812
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 167aa    MW: 18815.2 Da    PI: 9.0331
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462934812genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.1e-193488256
               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               +k+ ++tkeq + Le+ F+ ++ +s++++ eLA++++Lt rqV vWFqNrRa+ k
  462934812 34 KKKLRLTKEQSTLLEDTFHAHNILSHAQKHELARQVNLTPRQVEVWFQNRRARTK 88
               678899***********************************************98 PP
2HD-ZIP_I/II117.67.1e-3834122189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  +kk+rl+keq++lLE++F++++ L++ +K+elar+++l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l++en+rL+ e  eL++
    462934812  34 KKKLRLTKEQSTLLEDTFHAHNILSHAQKHELARQVNLTPRQVEVWFQNRRARTKLKQTEVDCELLKRCCESLTDENQRLKLELMELQQ 122
                  59*************************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.27E-202491IPR009057Homeodomain-like
PROSITE profilePS5007117.5893090IPR001356Homeobox domain
SMARTSM003893.3E-153294IPR001356Homeobox domain
PfamPF000462.6E-163488IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-193493IPR009057Homeodomain-like
CDDcd000861.63E-143491No hitNo description
PROSITE patternPS0002706588IPR017970Homeobox, conserved site
PfamPF021831.9E-990121IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.2E-1590133IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MTEKGTRKKL KIIDDSRSSR GPRPSEEEDD SSTKKKLRLT KEQSTLLEDT FHAHNILSHA  60
QKHELARQVN LTPRQVEVWF QNRRARTKLK QTEVDCELLK RCCESLTDEN QRLKLELMEL  120
QQSSSAAAGL YVQFPRAAAG AVSICPSCEK ITMTSGGDTS KSSSYSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13238TKKKLRL
28290RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462934812
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813457.14e-80homeobox-leucine zipper protein HOX18-like
SwissprotQ5Z6F66e-62HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBLA0A2S3HGQ71e-78A0A2S3HGQ7_9POAL; Uncharacterized protein
STRINGSi007238m1e-74(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-46homeobox from Arabidopsis thaliana