PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462934678
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HSF
Protein Properties Length: 336aa    MW: 37932.4 Da    PI: 5.6702
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462934678genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1093.6e-34381292102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d +++ ++sws+++nsf+v+d++ f + +Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++sF +g+++ll++i+
     462934678  38 FLTKTYDMVDDLTTDAVVSWSATNNSFIVWDPHIFGTVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANESFLRGHRNLLKNIR 125
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     462934678 126 RRKP 129
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.9E-3434127IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-3734127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.0E-5934127IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-3038127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-193861IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-1989101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDHRMVNPVK IESQPPLGIA NGQPTPMDGL HDGGPPPFLT KTYDMVDDLT TDAVVSWSAT  60
NNSFIVWDPH IFGTVLLPRY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN ESFLRGHRNL  120
LKNIRRRKPP HSSSNQQSLG SYLEVGHFGY DEEIDQLKRD KQLLMAEVVK LRQEQQNTKS  180
ALQAMEEKLQ GTEQKQQQMM AFMARVMQNP EFMNQLISQR EMRKGLEGVI SKKRRRRIDQ  240
GPEADSMGTS SSLEGSQAVF EPQEPVESLV NGVASDLESS SVETKGYEVQ QGVSSNGSER  300
LRSRPSGELN DAFWEDLLHE GGFGEDAGNP VGQNGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-253612727129Heat shock factor protein 1
5d5v_B3e-253612727129Heat shock factor protein 1
5d5v_D3e-253612727129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231236KKRRRR
2232237KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269|PubMed:18064488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462934678
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981438.20.0heat stress transcription factor A-2e
SwissprotQ6F3880.0HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBLK4AC790.0K4AC79_SETIT; Uncharacterized protein
STRINGPavir.J01161.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-104heat shock transcription factor A6B
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]