PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462934117 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NF-YC | ||||||||
Protein Properties | Length: 235aa MW: 26295.7 Da PI: 7.0325 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 56.4 | 6.4e-18 | 52 | 128 | 22 | 98 |
NF-YC 22 PlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++adedv +i+ +Pvl+s+a elf+ +l r++ + ++ +tl+ ++++v+r fdfl+++v + 462934117 52 WWARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEITLQSGAKTLNSFHLKQCVKRYSSFDFLTEVVNK 128 569*********************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.2E-23 | 54 | 127 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.7E-17 | 54 | 113 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 9.14E-19 | 60 | 130 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MRKKLGTRFP AAVLCNWDSM MRRASRIRSH AAVCTLEVWF VVSWVYESMY FWWARIKKIM 60 QADEDVGKIA LAVPVLVSRA LELFLQDLID RTYEITLQSG AKTLNSFHLK QCVKRYSSFD 120 FLTEVVNKVP DLGGADSCGD ERGLPRRRKS NGSDPENDES RSSKMAIRSS LSPRGRGRGR 180 AAPAPATSSK VDEANTDHHA DWPMPDAIGN IGVGPSGFGH LTVQVDEDED YDNED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 5e-20 | 51 | 113 | 12 | 74 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 148 | PRRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462934117 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT062754 | 1e-127 | BT062754.1 Zea mays full-length cDNA clone ZM_BFb0342F17 mRNA, complete cds. | |||
GenBank | EU964689 | 1e-127 | EU964689.1 Zea mays clone 280866 repressor protein mRNA, complete cds. | |||
GenBank | JX428444 | 1e-127 | JX428444.1 Zea mays subsp. mays clone pUT3038 CA5P8 CCAAT-HAP5 type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001159016.1 | 3e-91 | repressor protein | ||||
TrEMBL | B6TI74 | 7e-90 | B6TI74_MAIZE; Nuclear factor Y subunit C11 | ||||
TrEMBL | K0DCL1 | 7e-90 | K0DCL1_MAIZE; CA5P8 CCAAT-HAP5 type transcription factor (Fragment) | ||||
STRING | GRMZM2G105317_P03 | 1e-90 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2172 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 1e-44 | nuclear factor Y, subunit C11 |