PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462933929
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 209aa    MW: 23870.5 Da    PI: 9.3535
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462933929genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.49e-47201631128
        NAM   1 lppGfrFhPtdeelvveyLkkk.vegkk.....lelee.......vikevdiykvePwdLpkkvkaeek....ewyfFskrdkkyatgkrknratksgyW 83 
                lppGfrFhPtdeelv +yL+ k +++ +     +   +       ++ evd++  ePw+Lp+++k +ek     wyfFs rd+kyatg+r+nratk+gyW
  462933929  20 LPPGFRFHPTDEELVFHYLRGKqIAAAQssqlmM---StysspavAMVEVDLHVREPWELPEEAKLSEKlidlLWYFFSFRDRKYATGSRTNRATKHGYW 116
                79******************88433333445441...145666646***************76666666666689************************* PP

        NAM  84 katgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                katgkdk +l++     +vg++ktLvfy grap+g+k+dWvmhe+rl
  462933929 117 KATGKDKVILEHggMMMKVGMRKTLVFYLGRAPNGRKSDWVMHEFRL 163
                ***********8444455***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-5311183IPR003441NAC domain
PROSITE profilePS5100553.17520183IPR003441NAC domain
PfamPF023654.7E-2721163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MIRSDMDASM MRLRDFESRL PPGFRFHPTD EELVFHYLRG KQIAAAQSSQ LMMSTYSSPA  60
VAMVEVDLHV REPWELPEEA KLSEKLIDLL WYFFSFRDRK YATGSRTNRA TKHGYWKATG  120
KDKVILEHGG MMMKVGMRKT LVFYLGRAPN GRKSDWVMHE FRLVTSVDVP PMEDWVLCRV  180
FNKGKGEDDH GGSSHKGFCA GGQLATAAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-472018317165NO APICAL MERISTEM PROTEIN
1ut4_B4e-472018317165NO APICAL MERISTEM PROTEIN
1ut7_A4e-472018317165NO APICAL MERISTEM PROTEIN
1ut7_B4e-472018317165NO APICAL MERISTEM PROTEIN
3swm_A5e-472018320168NAC domain-containing protein 19
3swm_B5e-472018320168NAC domain-containing protein 19
3swm_C5e-472018320168NAC domain-containing protein 19
3swm_D5e-472018320168NAC domain-containing protein 19
3swp_A5e-472018320168NAC domain-containing protein 19
3swp_B5e-472018320168NAC domain-containing protein 19
3swp_C5e-472018320168NAC domain-containing protein 19
3swp_D5e-472018320168NAC domain-containing protein 19
4dul_A4e-472018317165NAC domain-containing protein 19
4dul_B4e-472018317165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462933929
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385696.13e-70PREDICTED: NAC domain-containing protein 100-like
SwissprotQ84TE61e-55NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLM0U5T86e-69M0U5T8_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP02760_0011e-69(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2552745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-67NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]