PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462933259
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 417aa    MW: 45437.6 Da    PI: 10.5888
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462933259genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.8e-11170220146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 
                      ++rWT+eE+  l  +v+++G g+W+tI +          R+  ++k++w++
        462933259 170 KQRWTAEEEAALRAGVARHGVGNWRTILKDPEfsstlCYRSNVDLKDKWRN 220
                      79****************************999999978**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.588165226IPR017930Myb domain
SuperFamilySSF466899.33E-16167224IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-13167221IPR009057Homeodomain-like
SMARTSM007174.9E-8169224IPR001005SANT/Myb domain
PfamPF002492.9E-8170221IPR001005SANT/Myb domain
CDDcd116606.25E-21171222No hitNo description
SuperFamilySSF467856.53E-14285350IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.4E-16285350IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.7E-10285350IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150420.416287371IPR005818Linker histone H1/H5, domain H15
PfamPF005388.4E-10292346IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
FPNSSLSATN PATSSSDGLR GCRSISAALT AELLSTWAAA GRPTPCGLGL TSLKQQLVIL  60
RSKILLFYLL TAGGRTRFMH RGRSLHPSTC RILHARFLSL STGSGDPSRH LRELPVRLQH  120
FQLPSSQLIC NVKSRRKQQQ PAAQQPSNSA VNRLNISKYS ILGLSMGVPK QRWTAEEEAA  180
LRAGVARHGV GNWRTILKDP EFSSTLCYRS NVDLKDKWRN MNVIVTASSS REKGRTGVKK  240
TRPPPKNNDQ SMTISTITSD VDDEIVDAKP IASVSSEAWN SSNPKKSNSR LDNVILEAIK  300
NLKEPTGSHR TTIANYIEEQ YWPPSDFDHL LSAKLKDLTT SGKLIKDSTK FTVLRGPKPQ  360
NAATGRFAEA EAIMAEAEAA AREAEAAEAD AQAAQAFAEA ALLTLKNRNA AKLMGQA
Cis-element ? help Back to Top
SourceLink
PlantRegMap462933259
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0957611e-169FP095761.1 Phyllostachys edulis cDNA clone: bphyem123a22, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-59telomere repeat binding factor 1