PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462932916
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family CPP
Protein Properties Length: 264aa    MW: 28564.4 Da    PI: 7.0056
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462932916genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR37.83.8e-121046541
        TCR  5 gCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
               +C+C  ++C+++YC Cf ++ +Cs+ C+Ce C N+e+
  462932916 10 SCSCGSTRCIRRYCHCFGNRWYCSDACRCEACWNTES 46
               7*********************************985 PP
2TCR48.91.3e-1585124140
        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                ++ kgC+C+kskC k+YCeCf++++ C+e+C+Ce+C N++
  462932916  85 RHVKGCTCRKSKCRKNYCECFKNRVACTERCQCEGCANSH 124
                589***********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.3E-6647IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163426.3317125IPR005172CRC domain
PfamPF036381.5E-81045IPR005172CRC domain
SMARTSM011142.9E-1385126IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.2E-1188123IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDDDEGPRPS CSCGSTRCIR RYCHCFGNRW YCSDACRCEA CWNTESRAAF VEERAEIILK  60
NKPGAFQSKI AREGDPSVPG KEQRRHVKGC TCRKSKCRKN YCECFKNRVA CTERCQCEGC  120
ANSHGTKGDA LLLQNNCDSG GTSDNSSGAS DGGSGTSDGS NGTSGGTAEI IDEGLLSPAE  180
RVAENVPAFG EDFHVSQHVH APGGSDLEAL FKTHPDHDYF SQSFHTLMHQ GSVKDLRHGS  240
TNSTPQGLLK PYINNGRKDG PCGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-13712210120Protein lin-54 homolog
5fd3_B3e-13712210120Protein lin-54 homolog
Cis-element ? help Back to Top
SourceLink
PlantRegMap462932916
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6SGH07e-59A0A3L6SGH0_PANMI; Protein tesmin/TSO1-like CXC 3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122672336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.11e-22Tesmin/TSO1-like CXC domain-containing protein