PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462932680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NF-YB | ||||||||
Protein Properties | Length: 199aa MW: 21523 Da PI: 4.632 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 51.4 | 2.7e-16 | 66 | 161 | 6 | 94 |
NF-YB 6 rflPianvsrimkkvlPana.......kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 ++lP a v r++k l + a + kda e + fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl + l+++r+ + 462932680 66 EELPKAIVRRLVKDKLAQIAggegaevIVNKDAMAAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFSEFVEPLGTSLQEFRNKN 161 679999999999998875331122222589***************************************************************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.9E-33 | 61 | 195 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.7E-10 | 67 | 138 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.15E-26 | 68 | 192 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
PILLGFAVCA SSVPFITTAT TSSSPSQERG TMAGEATKES EPQPQAAQAQ DKTAPASAPM 60 TEAEVEELPK AIVRRLVKDK LAQIAGGEGA EVIVNKDAMA AFAESARIFI HYLSATANDM 120 CKESKRQTIN ADDVLKALDE MEFSEFVEPL GTSLQEFRNK NAGKRSEANK KQKEKRRKLN 180 EEALPHQEND AADDAENGD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462932680 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT060559 | 1e-130 | BT060559.1 Zea mays full-length cDNA clone ZM_BFb0015O22 mRNA, complete cds. | |||
GenBank | EU962697 | 1e-130 | EU962697.1 Zea mays clone 244791 DNA polymerase epsilon subunit 3 mRNA, complete cds. | |||
GenBank | EU964046 | 1e-130 | EU964046.1 Zea mays clone 275447 DNA polymerase epsilon subunit 3 mRNA, complete cds. | |||
GenBank | KJ728301 | 1e-130 | KJ728301.1 Zea mays clone pUT6581 CCAAT-DR1 transcription factor (CADR16) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801207.1 | 3e-83 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A0A9GDS4 | 3e-89 | A0A0A9GDS4_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Bb01701.1.p | 3e-79 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10414 | 37 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 2e-36 | nuclear factor Y, subunit B11 |