PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462932556
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HSF
Protein Properties Length: 254aa    MW: 27234.3 Da    PI: 6.4431
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462932556genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.76.6e-32141018103
                   HHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   8 eiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103
                   ++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+kg+k+ll++i+r+k++
     462932556  14 DLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGEKQLLCEIHRRKTS 101
                   789************6667*****************************************999.........**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000561.4E-14831IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004157.5E-461098IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-271498IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.5E-271498IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.6E-311498IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-144759IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404872IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-146072IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEAVESPGAV PDQDLVDDPA TDHIVSWGDD RVSTFVVWRP PEFARDILPN YFKHNNFSSF  60
VRQLNTYGFR KVVPERWEFA NEFFRKGEKQ LLCEIHRRKT SSASPVSPSP PPFFAPPHFP  120
LFHHPGVQHH HHHQFMGDDG VAVAAHGMGM GMATTSSSSL TIADEPSPPP QVDNKSSGGE  180
AGSSSCAAAP PTMLFGVHLS AAPPSGAGTK RPPSPDEQAP SSLRPATKPR LELESADLSL  240
SVAPSAASSP ASTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-191510127123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462932556
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411901e-125AK241190.1 Oryza sativa Japonica Group cDNA, clone: J065120N14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576600.13e-70heat stress transcription factor B-4c
SwissprotQ67U946e-69HFB4C_ORYSJ; Heat stress transcription factor B-4c
TrEMBLM8C7N28e-91M8C7N2_AEGTA; Uncharacterized protein
STRINGEMT333201e-91(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-54heat shock transcription factor B4