PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462932436
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 301aa    MW: 33196.9 Da    PI: 10.3936
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462932436genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.84.9e-08100144344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                       W++ E +l+ ++ + +G g   +W++++r mg  Rt+ +++  +
        462932436 100 EWSQKENKLFEQVLACYGEGtpdRWHKVSRAMGGSRTADEVRRQY 144
                      7*****************************************988 PP

2Myb_DNA-binding23.51.3e-07203247344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                       W++ E +l+ ++ + +G g   +W++++r mg  R++ +++  +
        462932436 203 EWSQKENKLFEQVLACYGEGtpdRWHKVSRAMGGSRSADEVRRQY 247
                      7*****************************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.98196152IPR017884SANT domain
SMARTSM007172.6E-797150IPR001005SANT/Myb domain
SuperFamilySSF466894.37E-1099150IPR009057Homeodomain-like
PfamPF002493.0E-6100144IPR001005SANT/Myb domain
CDDcd001672.10E-5100147No hitNo description
PROSITE profilePS512937.762199255IPR017884SANT domain
SMARTSM007175.0E-7200253IPR001005SANT/Myb domain
SuperFamilySSF466895.54E-10202254IPR009057Homeodomain-like
CDDcd001673.83E-5203250No hitNo description
PfamPF002495.2E-6203247IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MPTDFFGPTP ASLMDSNTSR WLRQRFCGFH EQIKCLPKSL GRPKSVCISM AAVANLGAGA  60
ASGVYTQNIS ASSGLQSRQS NRKMSSGSRS SLRNGNAASE WSQKENKLFE QVLACYGEGT  120
PDRWHKVSRA MGGSRTADEV RRQYELLQED HRDQTIRASA SRYLTRVYTQ NTSASSGLQS  180
RQSNRKMSSG SRSSSRNGNA ASEWSQKENK LFEQVLACYG EGTPDRWHKV SRAMGGSRSA  240
DEVRRQYELL QEDVESIVSG RIPFPKSDAK NHRTGITAAK AVEGNVQKIR ELVQACSGSQ  300
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-152042741175RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462932436
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGMLOC_75951.11e-33(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-19RAD-like 6