PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462932436 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 301aa MW: 33196.9 Da PI: 10.3936 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.8 | 4.9e-08 | 100 | 144 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W++ E +l+ ++ + +G g +W++++r mg Rt+ +++ + 462932436 100 EWSQKENKLFEQVLACYGEGtpdRWHKVSRAMGGSRTADEVRRQY 144 7*****************************************988 PP | |||||||
2 | Myb_DNA-binding | 23.5 | 1.3e-07 | 203 | 247 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W++ E +l+ ++ + +G g +W++++r mg R++ +++ + 462932436 203 EWSQKENKLFEQVLACYGEGtpdRWHKVSRAMGGSRSADEVRRQY 247 7*****************************************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.981 | 96 | 152 | IPR017884 | SANT domain |
SMART | SM00717 | 2.6E-7 | 97 | 150 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.37E-10 | 99 | 150 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.0E-6 | 100 | 144 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.10E-5 | 100 | 147 | No hit | No description |
PROSITE profile | PS51293 | 7.762 | 199 | 255 | IPR017884 | SANT domain |
SMART | SM00717 | 5.0E-7 | 200 | 253 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.54E-10 | 202 | 254 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.83E-5 | 203 | 250 | No hit | No description |
Pfam | PF00249 | 5.2E-6 | 203 | 247 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 301 aa Download sequence Send to blast |
MPTDFFGPTP ASLMDSNTSR WLRQRFCGFH EQIKCLPKSL GRPKSVCISM AAVANLGAGA 60 ASGVYTQNIS ASSGLQSRQS NRKMSSGSRS SLRNGNAASE WSQKENKLFE QVLACYGEGT 120 PDRWHKVSRA MGGSRTADEV RRQYELLQED HRDQTIRASA SRYLTRVYTQ NTSASSGLQS 180 RQSNRKMSSG SRSSSRNGNA ASEWSQKENK LFEQVLACYG EGTPDRWHKV SRAMGGSRSA 240 DEVRRQYELL QEDVESIVSG RIPFPKSDAK NHRTGITAAK AVEGNVQKIR ELVQACSGSQ 300 V |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-15 | 204 | 274 | 11 | 75 | RADIALIS |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462932436 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | MLOC_75951.1 | 1e-33 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1067 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75250.1 | 2e-19 | RAD-like 6 |