PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462931694
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 422aa    MW: 46891.6 Da    PI: 9.7213
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462931694genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2483.1e-15204263155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+++GV++++++gr++A+++d  ++n    k+ k+++lg +  +e Aa+a++ a++k++g
  462931694 204 SRFRGVSRHRWTGRFEAHLWDkGTWNPtqkKKgKQVYLGAYNEEEAAARAYDLAALKYWG 263
                789******************888855566447*************************98 PP
2AP252.21.5e-16306357155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  462931694 306 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 357
                89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.4E-12204263IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-16204272IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-15205271IPR001471AP2/ERF domain
SMARTSM003803.5E-25205277IPR001471AP2/ERF domain
PROSITE profilePS5103219.572205271IPR001471AP2/ERF domain
PfamPF008475.4E-12306357IPR001471AP2/ERF domain
CDDcd000183.35E-20306360No hitNo description
SuperFamilySSF541713.4E-15306363IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-15307362IPR001471AP2/ERF domain
PROSITE profilePS5103217.411307365IPR001471AP2/ERF domain
SMARTSM003801.0E-19307369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MNKNLGNTVD ALSSHGAVST AYTRRKRLED AVKVPSKTDG SSAESTVLQG QVKRQMRPCK  60
CLVLIMALKG MSIDGNKDGP QQRHLFTTAY KHSHARRCYF PLLSKDNSAH SFAQKLDFNR  120
DQAKSLASDF VDMETYSLVK DELNVGGGGQ GVLYCSAAPR GGGSDGTVKS VKRRKREPPA  180
AVTVSKEEAG GDKSGSGNAI KRSSRFRGVS RHRWTGRFEA HLWDKGTWNP TQKKKGKQVY  240
LGAYNEEEAA ARAYDLAALK YWGPSTYTNF PVVDYEKELK VMQNVSKEEY LASIRRKSNG  300
FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYST QEEAARAYDI AAIEYRGINA  360
DVDVDTKPAL AEPLGRPPAE AEVREAALYN AAPEEEGFAC SMYELDDSFA RIEQSLWSCL  420
QQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168174KSVKRRK
2229237PTQKKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462931694
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0599891e-61EF059989.1 Brachypodium sylvaticum hypothetical protein (57h21.1), methyl sulfoxide reductase (57h21.2), hypothetical protein (57h21.3), oxidoreductase (57h21.4), auxin efflux carrier (57h21.6), CCR4 associated factor-like protein (57h21.7), ribosomal subunit 8E protein (57h21.8), expressed protein (57h21.9), expressed protein (57h21.10), acid phosphatase (57h21.11), polygalacturonase inhibitor (57h21.12), proteasome (57h21.13), leucine carboxyl methyl transferase (57h21.14), homeobox (57h21.15), serine threonine kinase (57h21.16), hypothetical protein (57h21.17), GTP binding protein (57h21.18), zinc carboxy peptidase (57h21.20), DNA repair protein (57h21.21), coatomer complex subunit (57h21.22), sulfate transporter (57h21.23), hypothetical protein (57h21.24), hypothetical protein (57h21.25), hypothetical protein (57h21.26), acyl-ATP thioesterase (57h21.27), hypothetical protein (57h21.28), hypothetical protein (57h21.29), superoxide dismutase (57h21.30), expressed protein (57h21.31), protein kinase (57h21.32), early nodulin protein (57h21.33), early nodulin protein (57h21.34), hypothetical protein (57h21.36), hypothetical protein (57h21.37), and expressed protein (57h21.38) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681620.11e-133AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A3L6PFA81e-134A0A3L6PFA8_PANMI; Uncharacterized protein
STRINGSi007857m1e-131(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-78AP2 family protein