PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462931643
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 294aa    MW: 31707.9 Da    PI: 7.1367
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462931643genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH469.2e-151091491055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                rrRRdriN+++  L+el+P++      K +Ka+iL  A+eY+ksLq
  462931643 109 RRRRDRINEKMRALQELVPHC-----NKTDKASILDDAIEYLKSLQ 149
                9*******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.07899148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-14105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.80E-15109153No hitNo description
Gene3DG3DSA:4.10.280.101.7E-17109157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-17109162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-12109149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGIKYLGAAG SKKWILAMDG GARPAPSQKR PLPPDGELVE LLWQDGAVVE HSQAHRHHHH  60
HQRAFRGDTG ASGVTGEAAS ATAWFPDAGA LGADVYAQLW HSIAHLEGRR RRDRINEKMR  120
ALQELVPHCN KTDKASILDD AIEYLKSLQV QVQVMWMTTG VAPMMLPGAH QLMTPMGMGL  180
NPSSMPPTTQ VLSQMQRVPP FMNNLFPNQM PQVPSAGTDV PNVANKVQNN RTAEPRNPFL  240
QPNDTPAAAP QLPNLFGYGS QMSQQNDIQE LLAGSSAPAL GADPPSSSDG TGTT
Cis-element ? help Back to Top
SourceLink
PlantRegMap462931643
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804058.12e-97transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
TrEMBLA0A2T7EKQ14e-97A0A2T7EKQ1_9POAL; Uncharacterized protein
STRINGPavir.Ba03888.1.p9e-94(Panicum virgatum)
STRINGSi030028m3e-94(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-25phytochrome interacting factor 3