PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462931336
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YB
Protein Properties Length: 153aa    MW: 17400.6 Da    PI: 5.0248
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462931336genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB42.12.1e-135504085
      NF-YB 40 sefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
               sefi +++se+++ c re++kti+++ +l al++lGf +y++++ +
  462931336  5 SEFINLLSSESNEVCSREEKKTIAPEHVLKALSDLGFREYIDEVYA 50
               8*****************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.84E-22598IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.1E-22597IPR009072Histone-fold
PfamPF008081.0E-7536IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MFLHSEFINL LSSESNEVCS REEKKTIAPE HVLKALSDLG FREYIDEVYA AYEQHKLDTL  60
QDSPKAGKFT GVEMTEEEAV AEQQRMFAEA RARMNNGAPK PKEPEQEQQQ QPQQPPQIQL  120
QMHAPPHHPM QPQLHPPLQQ SSIFQASILA ICA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B3e-1959147133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462931336
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0333021e-114BT033302.1 Zea mays full-length cDNA clone ZM_BFb0078O13 mRNA, complete cds.
GenBankKJ7282881e-114KJ728288.1 Zea mays clone pUT6567 CCAAT-DR1 transcription factor (CADR3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973302.12e-64protein Dr1 homolog
SwissprotP495922e-45NC2B_ARATH; Protein Dr1 homolog
TrEMBLK3YIU04e-63K3YIU0_SETIT; Uncharacterized protein
STRINGSi014159m7e-64(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.32e-45nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]