PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462931334
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YB
Protein Properties Length: 287aa    MW: 32585.3 Da    PI: 5.2853
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462931334genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB66.45.7e-213731585
      NF-YB 15 rimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
               +i+k++lP + ++++da++++ ec +efi +++se+++ c re++kti+++ +l al++lGf +y++++ +
  462931334  3 KIIKEMLPPDVRVARDAQDLLVECCVEFINLLSSESNEVCSREEKKTIAPEHVLKALSDLGFREYIDEVYA 73
               89*****************************************************************9854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.67E-302120IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.7E-323119IPR009072Histone-fold
PfamPF008081.3E-17359IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLLSSESNE VCSREEKKTI APEHVLKALS  60
DLGFREYIDE VYAAYEQHKL DTLDSPKAGK FTGVEMTEEE AVAEQQRMFA EARARMNNGA  120
PKPKEPEQEQ QQQPQQPPQI QLQMHAPPHH PMQPQLHPPL QQSVQPQLQL HQPPQPSLQT  180
QPHVHAQPQQ PPQLQQHSLP EQPSQSQPQQ TSQAQHPLPV QPSQPQTQLH QQAEQPSQVQ  240
AQQHTQAQPQ QPPQVQPQQL PQPQVQLQDQ PQAQPQPQVQ TEHGVES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B4e-29311323133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462931334
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0359461e-160BT035946.1 Zea mays full-length cDNA clone ZM_BFb0089E11 mRNA, complete cds.
GenBankBT0422531e-160BT042253.1 Zea mays full-length cDNA clone ZM_BFb0180H13 mRNA, complete cds.
GenBankBT0613071e-160BT061307.1 Zea mays full-length cDNA clone ZM_BFb0133I20 mRNA, complete cds.
GenBankEU9766701e-160EU976670.1 Zea mays clone 986701 repressor protein mRNA, complete cds.
GenBankHQ8587551e-160HQ858755.1 Zea mays clone UT1497 CCAAT1-Dr1 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973302.11e-94protein Dr1 homolog
TrEMBLK3YIU02e-93K3YIU0_SETIT; Uncharacterized protein
STRINGSi014159m4e-94(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57203549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.44e-64nuclear factor Y, subunit B13