PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462930844 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 174aa MW: 20300 Da PI: 8.06 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.2 | 5.1e-56 | 19 | 148 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+++d+y++ePwdL+ + + e++ewyfFs +d+ky+tg+r+nrat +g+Wkatg+dk+v++ k+ 462930844 19 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLQVhcgMGYDEQNEWYFFSYKDRKYPTGTRTNRATMAGFWKATGRDKAVHD-KN 116 69****************************.9***************943543344777**************************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 +l+g++ktLvfykgrap+g+ktdW+mheyrle 462930844 117 KLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 148 9*****************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-57 | 15 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.651 | 19 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-29 | 20 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 174 aa Download sequence Send to blast |
MHPAGAAAGD HMDSMESCVP PGFRFHPTDE ELVGYYLRKK VASQKIDLDV IRDIDLYRIE 60 PWDLQVHCGM GYDEQNEWYF FSYKDRKYPT GTRTNRATMA GFWKATGRDK AVHDKNKLIG 120 MRKTLVFYKG RAPNGQKTDW IMHEYRLETD ENAPPQARSL ISAIYLLPCT YYYQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-49 | 16 | 147 | 12 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462930844 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KT075087 | 0.0 | KT075087.1 Panicum virgatum secondary wall NAC master switch (SWN5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022678630.1 | 1e-106 | NAC domain-containing protein 37 isoform X1 | ||||
Swissprot | Q9SL41 | 2e-95 | NAC37_ARATH; NAC domain-containing protein 37 | ||||
TrEMBL | A0A368SWG2 | 1e-105 | A0A368SWG2_SETIT; Uncharacterized protein | ||||
TrEMBL | M8B384 | 1e-106 | M8B384_AEGTA; NAC domain-containing protein 7 | ||||
STRING | Pavir.Ib00161.1.p | 1e-107 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3625 | 37 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G18060.1 | 9e-98 | vascular related NAC-domain protein 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|