PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462929967

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HD-ZIP

Protein Properties

Length: 721aa MW: 78630.3 Da PI: 6.0577

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462929967	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.6	7.9e-17	72	122	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++q+ eLe+lF+++++p+ e+r+ L +k+g++ +q+k+WFqN+R + k 462929967 72 RHKAQQILELETLFQSCSHPDDETRRALGAKIGMDSQQIKNWFQNKRSQNK 122 5789*******************************************9987 PP
2	START	111.3	1.5e-35	227	447	3	205
HHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.. CS START 3 aeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.. 88 ae+a++e++ +a+a++p+W s+ + +n+ e++ + ++ + +ea r++++v ++++ +l+d + W+++++ +++ +v ssg 462929967 227 AERAMKEFQELAAAGAPLWLASAdgDVLNYREYMPVVFPGMLgpcpqgFVSEATRECAIVWGTAV----DLVDGR--WSKMFPgivaAVSARDVGSSGtl 320 799******************9999******997779999999************....555555..777777766688889999999 PP ....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS START 89 ....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe....sssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178 g +qlm+ael + sp p R + f+R+++ +++ +w++vdvSvd ++ ++ R++llpSg+li+ ++ ++kvtw+ h++++++++ 462929967 321 gsrdGLIQLMNAELWVQSPRMPnRSVKFLRFTKMmENGRQWAVVDVSVDGILGQEGrvepPAQNTRCRLLPSGCLIKNLGTDYCKVTWIVHAEYDEATVV 420 ********************************99999*****9644444333457899******************************** PP HHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 179 wllrslvksglaegaktwvatlqrqce 205 l+++l++sg+a ga++w+ l+rqce 462929967 421 PLFKPLLRSGQALGARRWLPVLKRQCE 447 ************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-15	47	122	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.05E-13	63	122	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.572	64	124	IPR001356	Homeobox domain
SMART	SM00389	1.8E-11	67	128	IPR001356	Homeobox domain
CDD	cd00086	2.57E-12	69	122	No hit	No description
Pfam	PF00046	2.6E-14	72	122	IPR001356	Homeobox domain
PROSITE profile	PS50848	26.343	216	451	IPR002913	START domain
CDD	cd08875	1.70E-80	222	447	No hit	No description
SuperFamily	SSF55961	4.26E-18	223	447	No hit	No description
SMART	SM00234	6.9E-20	225	448	IPR002913	START domain
Pfam	PF01852	6.4E-29	227	447	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence Send to blast
MENNEGTQNN SNGHDLNIAI ESDDNTDLIW NYQEFDFDTL LGDDDDDASN DHDAEEGRDN 60 GHESEASSKT KRHKAQQILE LETLFQSCSH PDDETRRALG AKIGMDSQQI KNWFQNKRSQ 120 NKLKSCWDEN REIRSINTVL QAENVQLRQT ILDRSCFSCH CQMAPPGQLS EKQRLLIENA 180 RLKEQYLRAE TMLRELTRGA PLPLAAPSIT VAGTGDGNHA TLFLQHAERA MKEFQELAAA 240 GAPLWLASAD GDVLNYREYM PVVFPGMLGP CPQGFVSEAT RECAIVWGTA VDLVDGRWSK 300 MFPGIVAAVS ARDVGSSGTL GSRDGLIQLM NAELWVQSPR MPNRSVKFLR FTKMMENGRQ 360 WAVVDVSVDG ILGQEGRVEP PAQNTRCRLL PSGCLIKNLG TDYCKVTWIV HAEYDEATVV 420 PLFKPLLRSG QALGARRWLP VLKRQCEYMG VLKNFPAGDG RKVVMEVAQR MTASFYAAIS 480 GPVTLPGSRI REWRGTGSSV PVRMVIWNSA GAVPGLPDSR VLSTTTTVWL PSTQPRVVLD 540 YLRNERRRGE WDILAHGASV KALGSIITGN VYGNAISILC PNVIADGTNK MLILQEACSD 600 PSCSLVVYSP IEKNVMLALM SGGNPITGFI LPSGFAILPD GYRKTPRASS SLSATSTSTA 660 PAGGNTTTAG CFLTATYQTL WSGPPADDNL AAGAFDAIGK KLCNAIENIK AAVGAEVIIP 720 A

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence Send to blast

MENNEGTQNN SNGHDLNIAI ESDDNTDLIW NYQEFDFDTL LGDDDDDASN DHDAEEGRDN  60
GHESEASSKT KRHKAQQILE LETLFQSCSH PDDETRRALG AKIGMDSQQI KNWFQNKRSQ  120
NKLKSCWDEN REIRSINTVL QAENVQLRQT ILDRSCFSCH CQMAPPGQLS EKQRLLIENA  180
RLKEQYLRAE TMLRELTRGA PLPLAAPSIT VAGTGDGNHA TLFLQHAERA MKEFQELAAA  240
GAPLWLASAD GDVLNYREYM PVVFPGMLGP CPQGFVSEAT RECAIVWGTA VDLVDGRWSK  300
MFPGIVAAVS ARDVGSSGTL GSRDGLIQLM NAELWVQSPR MPNRSVKFLR FTKMMENGRQ  360
WAVVDVSVDG ILGQEGRVEP PAQNTRCRLL PSGCLIKNLG TDYCKVTWIV HAEYDEATVV  420
PLFKPLLRSG QALGARRWLP VLKRQCEYMG VLKNFPAGDG RKVVMEVAQR MTASFYAAIS  480
GPVTLPGSRI REWRGTGSSV PVRMVIWNSA GAVPGLPDSR VLSTTTTVWL PSTQPRVVLD  540
YLRNERRRGE WDILAHGASV KALGSIITGN VYGNAISILC PNVIADGTNK MLILQEACSD  600
PSCSLVVYSP IEKNVMLALM SGGNPITGFI LPSGFAILPD GYRKTPRASS SLSATSTSTA  660
PAGGNTTTAG CFLTATYQTL WSGPPADDNL AAGAFDAIGK KLCNAIENIK AAVGAEVIIP  720
A

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462929967

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1E5WKZ3	0.0	A0A1E5WKZ3_9POAL; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
STRING	Si032393m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8324	17	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	1e-112	protodermal factor 2