PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462929626
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family LSD
Protein Properties Length: 142aa    MW: 14772.3 Da    PI: 7.7287
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462929626genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.69.7e-142751125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               C gCr+lL+YP+GA+sV+Ca+C tV
  462929626 27 CTGCRNLLMYPAGATSVCCAVCSTV 51
               9**********************99 PP
2zf-LSD146.84.7e-156690125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               CggC+tlL+Y rGA+sV+C++C+tV
  462929626 66 CGGCHTLLMYIRGATSVQCSCCHTV 90
               ************************9 PP
3zf-LSD141.91.6e-13104128125
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                Cg+Cr lL+Y +GA+sV+Ca+C++V
  462929626 104 CGNCRMLLMYQYGARSVKCAVCNFV 128
                ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.0E-122453IPR005735Zinc finger, LSD1-type
PfamPF069437.7E-112751IPR005735Zinc finger, LSD1-type
SuperFamilySSF486958.79E-527125IPR011031Multihaem cytochrome
TIGRFAMsTIGR010538.4E-156392IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-126690IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.8E-12101131IPR005735Zinc finger, LSD1-type
PfamPF069439.8E-13104128IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MPVPLAPYPT PPVPLTPPNG AQSQLVCTGC RNLLMYPAGA TSVCCAVCST VSAVPAPGTE  60
MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLAMEANQVA HVNCGNCRML LMYQYGARSV  120
KCAVCNFVTS VGDLNLPSNS SQ
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462929626
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0769011e-123EU076901.1 Bambusa oldhamii LOL1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269986.11e-82PREDICTED: protein LSD1
RefseqXP_010269987.11e-82PREDICTED: protein LSD1
RefseqXP_010269988.11e-82PREDICTED: protein LSD1
SwissprotQ0J7V91e-79LSD1_ORYSJ; Protein LSD1
TrEMBLA0A2T7D3S84e-88A0A2T7D3S8_9POAL; Uncharacterized protein
TrEMBLA0A2T8IF354e-88A0A2T8IF35_9POAL; Uncharacterized protein
TrEMBLC5YHD04e-88C5YHD0_SORBI; Uncharacterized protein
TrEMBLK3YK344e-88K3YK34_SETIT; Uncharacterized protein
STRINGPavir.Fa01884.1.p7e-89(Panicum virgatum)
STRINGSi014603m7e-89(Setaria italica)
STRINGSb07g004050.17e-89(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.33e-59lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]