PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462929432 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 335aa MW: 36913.2 Da PI: 7.2999 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44 | 5e-14 | 39 | 80 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + ++ E+e ++ + + lG++ W+tIa++m+ gRt++++k++w++ 462929432 39 PISKREEEVIISLQQSLGNR-WSTIAARMP-GRTDNEIKNYWNS 80 56889***************.*********.***********95 PP | |||||||
2 | Myb_DNA-binding | 44 | 5e-14 | 168 | 209 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + ++ E+e ++ + + lG++ W+tIa++m+ gRt++++k++w++ 462929432 168 PISKREEEVIISLQQSLGNR-WSTIAARMP-GRTDNEIKNYWNS 209 56889***************.*********.***********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-5 | 17 | 30 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.21E-19 | 17 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.333 | 18 | 31 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 31 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.656 | 32 | 86 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-12 | 36 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-11 | 39 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.14E-9 | 39 | 79 | No hit | No description |
PROSITE profile | PS50090 | 4.739 | 141 | 160 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-5 | 143 | 159 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.98E-20 | 146 | 215 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 160 | 215 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.656 | 161 | 215 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-12 | 165 | 213 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-11 | 168 | 209 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.14E-9 | 168 | 208 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MVRKPSHADA GTGERLRRSG KSCRLRWMNY LRPDLKKEPI SKREEEVIIS LQQSLGNRWS 60 TIAARMPGRT DNEIKNYWNS RIRKRLSAAA KAGRTSDSAE EPAAAAAGEE EESTTTAEPL 120 PIPARFPVFA CQLLDGSGGA VSSRLRRSGK SCRLRWMNYL RPDLKKEPIS KREEEVIISL 180 QQSLGNRWST IAARMPGRTD NEIKNYWNSR IRKRLSAAAK AGRTSDSAEE PAAAAAGEEE 240 ESTTTAEPLP IPARFPVFAC QLLDGSGGAV SSSTTTQQKS GSEESEASVG DSNMIHDFFS 300 FDEFDYPSDL LMDVPGVMDA WESELYSANS MGSIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-19 | 18 | 215 | 4 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-19 | 18 | 215 | 4 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462929432 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971559 | 8e-81 | EU971559.1 Zea mays clone 367166 anthocyanin regulatory C1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817319.1 | 4e-93 | myb-related protein Hv33-like | ||||
TrEMBL | A0A2T7DRN8 | 5e-94 | A0A2T7DRN8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J24104.1.p | 2e-87 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8703 | 25 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 5e-30 | myb domain protein 46 |