PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462929323
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family FAR1
Protein Properties Length: 444aa    MW: 50137.3 Da    PI: 9.5444
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462929323genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.83.2e-1711106185
       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...........tekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85 
                +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk            ++    + + +rtgC a+l++k+    + +++t++   H
  462929323  11 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqdeagagagtsSSPVPPRCPDSRTGCLASLTIKLVPsANAFRITDFCPSH 106
                6*****************99997666.****************9999888888877644444458899**************98999*****99888 PP

2FAR170.44.2e-22137236290
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                fYn+YA++vGFsvr+s++k++   g i++r fvCs+eg +++ k++             + + r   + trtgC+a++++k +   +++v+k+  eHnH+
  462929323 137 FYNRYAEHVGFSVRRSYKKRK--RGVIVSRIFVCSREGVSDRAKQEgittgstnggtglSGTPRPGPPPTRTGCQARMVIKITPCRTYRVAKFFPEHNHP 234
                9*************9976665..999****************9999********999987888888999******************************* PP

       FAR1  89 la 90 
                la
  462929323 235 LA 236
                97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-1411106IPR004330FAR1 DNA binding domain
PfamPF031011.2E-18137236IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MYFETEDDAY EFYKAYAARL GFVVRKSNKS KNSRHTVTRR LFVCSKQGFR QEPKKPQDEA  60
GAGAGTSSSP VPPRCPDSRT GCLASLTIKL VPSANAFRIT DFCPSHHSIA TMASLPDPKD  120
GPYPDMHFET EEDAYVFYNR YAEHVGFSVR RSYKKRKRGV IVSRIFVCSR EGVSDRAKQE  180
GITTGSTNGG TGLSGTPRPG PPPTRTGCQA RMVIKITPCR TYRVAKFFPE HNHPLANPDN  240
RTMFSADILT TLRKDNLIND LKKELSEQED ILQFLRRYEA ILEEHRSKKL HADVDSSQVT  300
LPIPSLRMLK QASSAYTPEA FKAIPRWEIM LLLQAVKQFL LEETNILTIQ HKQEELLRQQ  360
TLHLNPRIIC GPSCPILRYC ACGYEPILGT IMRSSVAKQH PYGQRTTWRG DSSPYSTMSS  420
AQKLACEVHS LHPTIDRIGV IYSF
Cis-element ? help Back to Top
SourceLink
PlantRegMap462929323
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1193871e-70AK119387.1 Oryza sativa Japonica Group cDNA clone:001-132-C03, full insert sequence.
GenBankAP0039561e-70AP003956.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1457_D07.
GenBankAP0042591e-70AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02.
GenBankAP0149631e-70AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126151e-70CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804639.11e-135protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025804640.11e-135protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1E5WBG31e-172A0A1E5WBG3_9POAL; Uncharacterized protein
STRINGPavir.J10702.1.p1e-142(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.13e-16FAR1-related sequence 12