PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462929281 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 324aa MW: 35408.8 Da PI: 4.9223 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.4e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEde+l++++k++G g+W++ ++ g+ R++k+c++rw +yl 462929281 14 KGRWTKEEDEILARYIKEHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + eE+e + ++++ lG++ W++Ia +++ gRt++++k++w+++l 462929281 67 RGNISIEEEEMIMKLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112 678889****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.718 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.03E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.087 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-24 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.81E-11 | 73 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009813 | Biological Process | flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MGRAPCCEKV GLKKGRWTKE EDEILARYIK EHGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI SIEEEEMIMK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRRASDFR 120 SGGDGVVVNV DLTKLPGGGK RRGGRTMAAK GGKVTKGKGK EKQVMAAEVV LKHETESQDT 180 NVSTPMSTQP CTTAHSEEER AQASASGVTS DGLEDGPLGP SEEMVSELLS PKLEMGMDRD 240 GACMDHDTDT GPCIKRESGP GGPSGDVAPE EGEKALEDLD LTGLDISVDD DMWDSLVWDY 300 DGMVVPDGGR QGELMTDLFF LDNM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462929281 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679411 | 1e-150 | HF679411.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB5 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967542.1 | 1e-134 | myb-related protein P | ||||
TrEMBL | A0A0A9JQV1 | 1e-142 | A0A0A9JQV1_ARUDO; Uncharacterized protein | ||||
STRING | Si002107m | 1e-133 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 8e-71 | myb domain protein 12 |