PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462929281
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 324aa    MW: 35408.8 Da    PI: 4.9223
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462929281genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.4e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEde+l++++k++G g+W++ ++  g+ R++k+c++rw +yl
        462929281 14 KGRWTKEEDEILARYIKEHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP

2Myb_DNA-binding48.91.5e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + eE+e + ++++ lG++ W++Ia +++ gRt++++k++w+++l
        462929281  67 RGNISIEEEEMIMKLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112
                      678889****************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-23564IPR009057Homeodomain-like
PROSITE profilePS5129417.718961IPR017930Myb domain
SuperFamilySSF466893.74E-2911108IPR009057Homeodomain-like
SMARTSM007171.0E-131363IPR001005SANT/Myb domain
PfamPF002492.3E-161461IPR001005SANT/Myb domain
CDDcd001674.03E-121661No hitNo description
PROSITE profilePS5129424.08762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-2465115IPR009057Homeodomain-like
SMARTSM007171.1E-1366114IPR001005SANT/Myb domain
PfamPF002499.9E-1467112IPR001005SANT/Myb domain
CDDcd001677.81E-1173112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTKE EDEILARYIK EHGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SIEEEEMIMK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRRASDFR  120
SGGDGVVVNV DLTKLPGGGK RRGGRTMAAK GGKVTKGKGK EKQVMAAEVV LKHETESQDT  180
NVSTPMSTQP CTTAHSEEER AQASASGVTS DGLEDGPLGP SEEMVSELLS PKLEMGMDRD  240
GACMDHDTDT GPCIKRESGP GGPSGDVAPE EGEKALEDLD LTGLDISVDD DMWDSLVWDY  300
DGMVVPDGGR QGELMTDLFF LDNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462929281
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794111e-150HF679411.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB5 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967542.11e-134myb-related protein P
TrEMBLA0A0A9JQV11e-142A0A0A9JQV1_ARUDO; Uncharacterized protein
STRINGSi002107m1e-133(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.18e-71myb domain protein 12