PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462929130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 190aa MW: 21772.3 Da PI: 10.2126 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.2 | 7.8e-54 | 1 | 128 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 + pGfrFhPtdeelv +yLk+k+++k+l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+ +++ 462929130 1 MLPGFRFHPTDEELVRFYLKRKIQQKSLPI-ELIRQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDRPIYSSdGSKC 99 579***************************.89***************9888999***************************************966677 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lvfykgra kg+ktdW+mhe+rl 462929130 100 IGLKKSLVFYKGRAAKGVKTDWMMHEFRL 128 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.221 | 1 | 153 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.59E-56 | 2 | 133 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-26 | 3 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MLPGFRFHPT DEELVRFYLK RKIQQKSLPI ELIRQLDIYK YDPWDLPKLA STGEKEWYFY 60 CPRDRKYRNS TRPNRVTGAG FWKATGTDRP IYSSDGSKCI GLKKSLVFYK GRAAKGVKTD 120 WMMHEFRLPS LTDPSVPQKK PLEKTIPPNV IQELLSHIAP ALVLASRLPG SPVSGSDMSG 180 HAMLEFCVVR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-52 | 3 | 128 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462929130 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC196472 | 1e-111 | AC196472.3 Zea mays BAC clone ZMMBBb-235B12 from chromosome 5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002454285.1 | 1e-107 | putative NAC domain-containing protein 94 | ||||
Swissprot | Q9FIW5 | 1e-85 | NAC94_ARATH; Putative NAC domain-containing protein 94 | ||||
TrEMBL | A0A287UQU3 | 1e-106 | A0A287UQU3_HORVV; Uncharacterized protein | ||||
STRING | OS02T0745250-00 | 1e-107 | (Oryza sativa) | ||||
STRING | Sb04g028015.1 | 1e-107 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3366 | 38 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 6e-88 | NAC domain containing protein 94 |