PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462928920
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 515aa    MW: 59248.8 Da    PI: 8.7879
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462928920genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.11.9e-104669427
               ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
               + C+f+++t  Ck+G+ CkF+H++
  462928920 46 PVCQFYMKTRDCKFGGVCKFHHPK 69
               78********************96 PP
2zf-CCCH19.81.4e-061811961227
                TS--TTTTT-SS-SSS CS
    zf-CCCH  12 tGtCkyGdrCkFaHgp 27 
                tG Ck+G+ CkF+H++
  462928920 181 TGDCKFGGVCKFHHPK 196
                9*************96 PP
3zf-CCCH33.76.2e-11244269227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                + ++C+f+++t  Ck+G+ CkF+H++
  462928920 244 DKAECQFYMKTRDCKFGGLCKFHHPK 269
                6789********************96 PP
4zf-CCCH39.59.3e-13380404226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                + ++C+f+++tG+Ck+G+ CkF+H+
  462928920 380 DKPECKFYMKTGECKFGAVCKFHHP 404
                6799********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0224269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7844270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-54571IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-74669IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.944171197IPR000571Zinc finger, CCCH-type
SMARTSM0035614177196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.183242270IPR000571Zinc finger, CCCH-type
SMARTSM003560.038243269IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8244269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-5245270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652378406IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-5379405IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9380404IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5382406IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4384404IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MYSLASSPTS EVPTARRVLA HAPSHSDCVS PTYPRENGFL NRPHKPVCQF YMKTRDCKFG  60
GVCKFHHPKD QPVPVSNCAL SSIKLPLRPG EPICTFYSRY GIMVQNENLI IQCKSSCTAL  120
LHHQPVRSQL LDVCWHMYHR IRIVFRPHIR SSESNTRLAL FQLEFIRGRM YFQIDLTNQN  180
TGDCKFGGVC KFHHPKDQTV PVSNCALSSI ELPLRPGEPM CTCYSRYGMF KYVQWENVFL  240
NIPDKAECQF YMKTRDCKFG GLCKFHHPKD RAVPSNYHYA RENPFALSIL AMECSSMVQN  300
ENSIIQCKLS CTGLLHHQPL RSQLLDVWGH MYNRIRIVFH PQNRSSESNP NRTLITSCRE  360
CHLIIPLLFA RENVFLNTPD KPECKFYMKT GECKFGAVCK FHHPNDGTVP VPNCALSSIE  420
LPLRPGEPIC TFYSRYQTFK FGVNLNSIIQ CKPSCTALLH HQPVRSQLFE VCWHMYLRIR  480
IVFLPHIQSS DSTPSRTLMT SGRECHLIIL LLFPV
Cis-element ? help Back to Top
SourceLink
PlantRegMap462928920
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.31e-46zinc finger nuclease 3