PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462928763 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | GATA | ||||||||
Protein Properties | Length: 202aa MW: 21729.7 Da PI: 10.0817 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.7 | 4.9e-16 | 142 | 177 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg + Tp++Rrgpdg++tLCnaCGl+++ k+ 462928763 142 CHHCGISAaaTPMMRRGPDGPRTLCNACGLMWANKN 177 *****99999**********************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 7.0E-11 | 6 | 41 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.208 | 6 | 41 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.5E-12 | 9 | 40 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.334 | 67 | 109 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.8E-16 | 67 | 109 | IPR010402 | CCT domain |
SMART | SM00401 | 5.3E-10 | 136 | 190 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.75E-10 | 140 | 177 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.2E-14 | 141 | 177 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.02E-10 | 141 | 177 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 142 | 169 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 7.8E-14 | 142 | 177 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
VPTTVPPVSS NTLTLSFQGE VYVFDSVSPD KVQAVLLLLG GRELNPGLGA SSSSSAPYSK 60 RLNFPHRVAS LMRFREKRKE RNFDKKIRYT VRKEVALRMQ RNRGQFTSSK PKPDEAAAEL 120 TTADGSPNWG ALEGRPPSAA ECHHCGISAA ATPMMRRGPD GPRTLCNACG LMWANKNGNA 180 IAAPGVEQEN PAAAMANGHE LS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00198 | DAP | Transfer from AT1G51600 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462928763 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014753285.1 | 1e-121 | GATA transcription factor 20 | ||||
Swissprot | Q5Z4U5 | 1e-119 | GAT20_ORYSJ; GATA transcription factor 20 | ||||
TrEMBL | A0A0A9EJS6 | 1e-122 | A0A0A9EJS6_ARUDO; Uncharacterized protein | ||||
STRING | Si006750m | 1e-119 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4325 | 38 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 3e-70 | ZIM-LIKE 2 |