PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462928673
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRF
Protein Properties Length: 324aa    MW: 35285.4 Da    PI: 9.0249
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462928673genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.66.2e-2569113145
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  462928673  69 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVEA 113
                79****************************************996 PP
2QLQ60.25.7e-211449237
        QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
               +FT+aQ ++L++Q+l+yKyL+a++PvP++Ll++i++
  462928673 14 PFTPAQYEELEQQALIYKYLLAGVPVPQDLLLPIRR 49
               9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.0E-121349IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.621449IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.6E-151448IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.51769113IPR014977WRC domain
PfamPF088793.1E-2170112IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MSGRWAASPR PAPPFTPAQY EELEQQALIY KYLLAGVPVP QDLLLPIRRG FVYHQPTLGY  60
GPYFGKKVDP EPGRCRRTDG KKWRCSKEAA PDSKYCERHM HRGRNRSRKP VEAQLVAAPL  120
SQPPTAPANL AGGFQNHSLY PAIAGGGGGP FGLGSTAQLH MDNAAPYATA VGGGSKNLRY  180
STYGMRSLAA EHSQLISGAM DTSVDNSWRL LPSQTSTFQV SSYPLYGTLS GLDESTICSL  240
PKTEREPVSF FGSDFATANA AKQENQTLRP FFDEWPKSRD SWSELADDNS LSSFSATQLS  300
ISIPMGTSDF SNTSSRSPHG IQSR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462928673
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5158451e-139EF515845.1 Zea mays putative growth-regulating factor 6 (GRF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976689.11e-176growth-regulating factor 3
SwissprotQ6AWY61e-171GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLA0A0A9GJC31e-176A0A0A9GJC3_ARUDO; GRF5
STRINGSi011853m1e-173(Setaria italica)
STRINGLPERR04G19760.11e-174(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24633476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-44growth-regulating factor 5