PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462927625

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 367aa MW: 40576.8 Da PI: 10.1326

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462927625	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.2	6.9e-49	28	153	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 +pGfrFhPt+eel+++yL+++vegk++++ e i+ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+ v +++++ +g 462927625 28 MPGFRFHPTEEELIDFYLRRRVEGKRFNI-ELINLVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMVRVEGNRSIG 126 79*************************.89***********888889******************************************* PP NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 lkktLvfy g+apkg +++W+m+eyrl 462927625 127 LKKTLVFYVGKAPKGLRSSWIMNEYRL 153 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.45E-56	27	173	IPR003441	NAC domain
PROSITE profile	PS51005	55.246	27	173	IPR003441	NAC domain
Pfam	PF02365	6.3E-24	29	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MGGDHHHNDM AARGAGGDDR QAAHDMVMPG FRFHPTEEEL IDFYLRRRVE GKRFNIELIN 60 LVDLYRYDPW DLPALASIGD KEWFFYVPRD RKYRNGDRPN RVTPSGYWKA TGADRMVRVE 120 GNRSIGLKKT LVFYVGKAPK GLRSSWIMNE YRLPHGEADR YQKEISLCRV YKRPGIEDNF 180 HLTGTTTRSS GSKAAATMDK KHRTSASPRL APMFDGGHSS GLMSKPYNGT SNGGLTSSAA 240 APAATMALHT SMFRSTGSVA SLSSTTSTEE DGTSLYHLKG TNQMLPSSTH ALLNANSTTM 300 ATIPIDELSR AIGSYNNNQG NPNQPLPSQG PLHPFPRSLI LRKPLSEDAM KIHLLRASIV 360 SPSQLAK

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MGGDHHHNDM AARGAGGDDR QAAHDMVMPG FRFHPTEEEL IDFYLRRRVE GKRFNIELIN  60
LVDLYRYDPW DLPALASIGD KEWFFYVPRD RKYRNGDRPN RVTPSGYWKA TGADRMVRVE  120
GNRSIGLKKT LVFYVGKAPK GLRSSWIMNE YRLPHGEADR YQKEISLCRV YKRPGIEDNF  180
HLTGTTTRSS GSKAAATMDK KHRTSASPRL APMFDGGHSS GLMSKPYNGT SNGGLTSSAA  240
APAATMALHT SMFRSTGSVA SLSSTTSTEE DGTSLYHLKG TNQMLPSSTH ALLNANSTTM  300
ATIPIDELSR AIGSYNNNQG NPNQPLPSQG PLHPFPRSLI LRKPLSEDAM KIHLLRASIV  360
SPSQLAK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-53	29	173	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-53	29	173	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-53	29	173	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-53	29	173	19	165	NO APICAL MERISTEM PROTEIN
4dul_A	2e-53	29	173	19	165	NAC domain-containing protein 19
4dul_B	2e-53	29	173	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462927625

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973013.1	0.0	NAC domain-containing protein 35
Swissprot	Q9ZVP8	3e-96	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A1E5V4Y2	0.0	A0A1E5V4Y2_9POAL; NAC domain-containing protein 35
STRING	Pavir.J38855.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7706	36	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	3e-97	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]