PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462927434
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 360aa    MW: 40118 Da    PI: 8.3293
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462927434genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1232.6e-382412329128
        NAM  29 eleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                ++  +i+ev+iy+++PwdLp k+  +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ls+ ++e++g+kk Lvfy+g+ pkg ktdW+mheyr
  462927434  24 PV-PIIAEVNIYQCNPWDLPPKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKAILSTpTSENIGVKKALVFYRGKPPKGIKTDWIMHEYR 122
                44.579*************96666789**************************************9989999***************************9 PP

        NAM 128 l 128
                l
  462927434 123 L 123
                8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100546.0091151IPR003441NAC domain
SuperFamilySSF1019411.83E-4820151IPR003441NAC domain
PfamPF023653.5E-1542123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MSHIIGGLGR STRGMLVSGS TPCPVPIIAE VNIYQCNPWD LPPKALFGEN EWYFFSPRDR  60
KYPNGARPNR AAGSGYWKAT GTDKAILSTP TSENIGVKKA LVFYRGKPPK GIKTDWIMHE  120
YRLAVGNKTT KRKGSSSMRL DDWVLCRIYK KSNNFQSSDQ EQEGSTVEED SSLTNNNMMN  180
GVPSPKSEAA HASDDDQFRP LSMTKSCSLT DFFNSIDYST LSELLLDVPA VPEPQQISPI  240
IYTRPASHSL NDVNNSINMP QVDALYSDYG ANYNGLKRKR IMTVDGVSSF DDGSSFTKKT  300
QLPSDSRSDS RSGCNQQLAE ASSSFQYSSL LSYPFLNQQQ LLLNNHLEMQ QYVCVKLAHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-602415743174Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462927434
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6735451e-139JN673545.1 Panicum virgatum cultivar Summer VS16 NAC transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809798.11e-147NAC domain-containing protein 67-like
TrEMBLA0A2S3H5F31e-145A0A2S3H5F3_9POAL; Uncharacterized protein
STRINGPavir.J16651.1.p1e-141(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38033775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.17e-69NAC-like, activated by AP3/PI