PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462927434 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 360aa MW: 40118 Da PI: 8.3293 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 123 | 2.6e-38 | 24 | 123 | 29 | 128 |
NAM 29 eleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 ++ +i+ev+iy+++PwdLp k+ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ls+ ++e++g+kk Lvfy+g+ pkg ktdW+mheyr 462927434 24 PV-PIIAEVNIYQCNPWDLPPKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKAILSTpTSENIGVKKALVFYRGKPPKGIKTDWIMHEYR 122 44.579*************96666789**************************************9989999***************************9 PP NAM 128 l 128 l 462927434 123 L 123 8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 46.009 | 1 | 151 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-48 | 20 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-15 | 42 | 123 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 360 aa Download sequence Send to blast |
MSHIIGGLGR STRGMLVSGS TPCPVPIIAE VNIYQCNPWD LPPKALFGEN EWYFFSPRDR 60 KYPNGARPNR AAGSGYWKAT GTDKAILSTP TSENIGVKKA LVFYRGKPPK GIKTDWIMHE 120 YRLAVGNKTT KRKGSSSMRL DDWVLCRIYK KSNNFQSSDQ EQEGSTVEED SSLTNNNMMN 180 GVPSPKSEAA HASDDDQFRP LSMTKSCSLT DFFNSIDYST LSELLLDVPA VPEPQQISPI 240 IYTRPASHSL NDVNNSINMP QVDALYSDYG ANYNGLKRKR IMTVDGVSSF DDGSSFTKKT 300 QLPSDSRSDS RSGCNQQLAE ASSSFQYSSL LSYPFLNQQQ LLLNNHLEMQ QYVCVKLAHR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-60 | 24 | 157 | 43 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462927434 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JN673545 | 1e-139 | JN673545.1 Panicum virgatum cultivar Summer VS16 NAC transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809798.1 | 1e-147 | NAC domain-containing protein 67-like | ||||
TrEMBL | A0A2S3H5F3 | 1e-145 | A0A2S3H5F3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J16651.1.p | 1e-141 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3803 | 37 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69490.1 | 7e-69 | NAC-like, activated by AP3/PI |