PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462927431 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 236aa MW: 26755.2 Da PI: 9.6555 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.7 | 3.3e-51 | 15 | 149 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..... 95 lppGfrFhPtdee+++ yL +k + ++ +++ ev+++++ePwdLp+k+k +ekewyf +++ ky+tg+r+nratk+gyWkatg+d+e++++ 462927431 15 LPPGFRFHPTDEEVITSYLLQKFLNPSFAP-RAMGEVNLNSCEPWDLPSKAKMGEKEWYFLCHKGMKYPTGSRTNRATKEGYWKATGRDREIFKTasase 113 79*************************888.88***************99999*****************************************988887 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++elvg+kktLvfy grap+g+kt+Wvmheyrle 462927431 114 ggGRELVGMKKTLVFYMGRAPRGSKTNWVMHEYRLE 149 776777****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-59 | 12 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.264 | 15 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-27 | 16 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MVERGVKSEQ GDLFLPPGFR FHPTDEEVIT SYLLQKFLNP SFAPRAMGEV NLNSCEPWDL 60 PSKAKMGEKE WYFLCHKGMK YPTGSRTNRA TKEGYWKATG RDREIFKTAS ASEGGGRELV 120 GMKKTLVFYM GRAPRGSKTN WVMHEYRLEG KSKDNNHSNL RFNPKDEWVV CKVFNKKIEE 180 KKAAVEYSAG TPNASSISVD TAGDGGNDFL DSMIDPMSRR VGAVQRGSND HDQRRW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-52 | 13 | 182 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-52 | 13 | 182 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-52 | 13 | 182 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-52 | 13 | 182 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-52 | 13 | 182 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-52 | 13 | 182 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-52 | 13 | 182 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-52 | 13 | 182 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-52 | 13 | 182 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-52 | 13 | 182 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-52 | 13 | 182 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-52 | 13 | 182 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 6e-52 | 13 | 182 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-52 | 13 | 182 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462927431 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977422.1 | 1e-122 | NAC domain-containing protein 77 | ||||
Refseq | XP_004978484.1 | 1e-122 | NAC domain-containing protein 77 | ||||
Swissprot | Q5CD17 | 3e-99 | NAC77_ORYSJ; NAC domain-containing protein 77 | ||||
TrEMBL | A0A368S328 | 1e-121 | A0A368S328_SETIT; Uncharacterized protein | ||||
TrEMBL | K3Y876 | 1e-121 | K3Y876_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J21394.1.p | 1e-123 | (Panicum virgatum) | ||||
STRING | Pavir.J39049.1.p | 1e-122 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5120 | 30 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 1e-76 | Arabidopsis NAC domain containing protein 87 |