PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462927251
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 403aa    MW: 44988.8 Da    PI: 7.4404
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462927251genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.42.3e-52161431128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                l+pGfrFhPtdeelv++yLk+k+++k++++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s+ +++ 
  462927251  16 LMPGFRFHPTDEELVSFYLKRKIQQKPISI-ELIRQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSVRPNRVTAAGFWKATGTDRPIYSSeGTKC 114
                689***************************.89***************9888999***************************************956667 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                +glkk+Lvfykgra +g ktdW+mhe+rl
  462927251 115 IGLKKSLVFYKGRAARGLKTDWMMHEFRL 143
                ***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-5515153IPR003441NAC domain
PROSITE profilePS5100555.17416202IPR003441NAC domain
PfamPF023659.5E-2618143IPR003441NAC domain
SuperFamilySSF1019411.27E-55190202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MEERNDINMD KSDEILMPGF RFHPTDEELV SFYLKRKIQQ KPISIELIRQ LDIYKYDPWD  60
LPKLASTGEK EWYFYCPRDR KYRNSVRPNR VTAAGFWKAT GTDRPIYSSE GTKCIGLKKS  120
LVFYKGRAAR GLKTDWMMHE FRLPSPADPS LPKRSIDKNI PLNVSIVNSY CSVQEQNSNA  180
ITKSEKKIFS ADSWTICRIF KKTTSMAQRG LLHTWGPPFP GAAEAEMLSA FQTVQASEFA  240
LESSSCSLQV APLAPSSQFT SRHGLQGQQS NPSVEASSCK LINFNCSSSL EPQESPIIFP  300
FEAPTSQKAG PVSLVFGAQP DHQLNGFVVD SSADINGGTS SRSHDSSTRK PNNGFSMNSI  360
DWEAVGKINF PFDLGADSSE ELKCNMPWES FLSPAAVPTE LPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-501620517168NO APICAL MERISTEM PROTEIN
1ut4_B7e-501620517168NO APICAL MERISTEM PROTEIN
1ut7_A7e-501620517168NO APICAL MERISTEM PROTEIN
1ut7_B7e-501620517168NO APICAL MERISTEM PROTEIN
3swm_A9e-501620520171NAC domain-containing protein 19
3swm_B9e-501620520171NAC domain-containing protein 19
3swm_C9e-501620520171NAC domain-containing protein 19
3swm_D9e-501620520171NAC domain-containing protein 19
3swp_A9e-501620520171NAC domain-containing protein 19
3swp_B9e-501620520171NAC domain-containing protein 19
3swp_C9e-501620520171NAC domain-containing protein 19
3swp_D9e-501620520171NAC domain-containing protein 19
4dul_A7e-501620517168NAC domain-containing protein 19
4dul_B7e-501620517168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462927251
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822140.10.0protein FEZ-like
SwissprotQ9ZVH02e-92FEZ_ARATH; Protein FEZ
TrEMBLA0A3L6PQ100.0A0A3L6PQ10_PANMI; Protein FEZ-like
TrEMBLK3YMN30.0K3YMN3_SETIT; Uncharacterized protein
STRINGSi015514m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33663882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.18e-95NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]