PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462927009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 392aa MW: 44648.6 Da PI: 10.42 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89 | 2.6e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien++nrqvtfskRr g++KKA+EL +LCdaev +++fsstg+lye++s 462927009 10 RIENSTNRQVTFSKRRSGLFKKAKELAILCDAEVGLVVFSSTGRLYEFAS 59 9***********************************************86 PP | |||||||
2 | SRF-TF | 89 | 2.6e-28 | 188 | 237 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien++nrqvtfskRr g++KKA+EL +LCdaev +++fsstg+lye++s 462927009 188 RIENSTNRQVTFSKRRSGLFKKAKELAILCDAEVGLVVFSSTGRLYEFAS 237 9***********************************************86 PP | |||||||
3 | K-box | 73.8 | 4.8e-25 | 259 | 334 | 9 | 84 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 ++a+a+ +q+e+ L+++++nLq+ +R+llG++L+ L++k+Lq+Le++Le sl++iR kK++l+++qi+el +k 462927009 259 SASAEAKLWQREAGSLRQQLHNLQEHHRQLLGQQLSGLDVKDLQNLENKLEMSLRNIRLKKDQLMIDQIQELNRKV 334 6788999*****************************************************************9995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.099 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.4E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.16E-28 | 2 | 62 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.27E-35 | 2 | 60 | No hit | No description |
PRINTS | PR00404 | 3.0E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.24 | 179 | 239 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.4E-40 | 179 | 238 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-32 | 180 | 268 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.76E-43 | 180 | 256 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 181 | 235 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-26 | 188 | 235 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.7E-23 | 261 | 334 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.893 | 264 | 372 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MGRGKIVIQR IENSTNRQVT FSKRRSGLFK KAKELAILCD AEVGLVVFSS TGRLYEFAST 60 RSADNRSNIP QLLIVRVRVT SARERRLYNG RVVQSFASKR LSITRKRDAS KRLVYSYICA 120 LGKQAPQGCN QSLKGISSCK ERERERERPA NQASPIGQRR ERDSISTYQI SAVLEVEEMG 180 RGKIVIQRIE NSTNRQVTFS KRRSGLFKKA KELAILCDAE VGLVVFSSTG RLYEFASTSM 240 KSVIERYNEA KEDHHTAISA SAEAKLWQRE AGSLRQQLHN LQEHHRQLLG QQLSGLDVKD 300 LQNLENKLEM SLRNIRLKKD QLMIDQIQEL NRKVYGRTVN ENPTGTTVRY SILNKDNENV 360 QVNLELSQPH NDEREESGTP SLGLQLQNDD KD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-22 | 1 | 270 | 1 | 92 | MEF2C |
5f28_B | 1e-22 | 1 | 270 | 1 | 92 | MEF2C |
5f28_C | 1e-22 | 1 | 270 | 1 | 92 | MEF2C |
5f28_D | 1e-22 | 1 | 270 | 1 | 92 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462927009 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821378.1 | 1e-114 | MADS-box transcription factor 23-like | ||||
Swissprot | Q6VAM4 | 1e-88 | MAD23_ORYSJ; MADS-box transcription factor 23 | ||||
TrEMBL | A0A2T7D7M0 | 1e-113 | A0A2T7D7M0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb01587.1.p | 1e-104 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP614 | 35 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 4e-75 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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