PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462926622
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 311aa    MW: 34070.4 Da    PI: 8.9591
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462926622genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.66.2e-33642061128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksg 81 
                lp+G++F+Ptd+el+ e+L+ k++ ++      +   +    +i+   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+          + 
  462926622  64 LPAGVKFDPTDQELL-EHLEGKARPESrklhplV---DefipTIEGEnGICYTHPERLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKvhsededgGGET 158
                799************.99****999985665442...133333665557**********.555666688******************8455554443377 PP

        NAM  82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                +W++tgk+++v++ +g+  g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  462926622 159 RWHKTGKTRAVMC-NGRPRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 206
                8************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-3857225IPR003441NAC domain
PROSITE profilePS5100532.16464225IPR003441NAC domain
PfamPF023659.0E-1565206IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MTWCNGFNDV RAAVDNGLSP AGVVAAAGKK AAASLAVLVK MCPSCGHRAQ YEQEPTTIQD  60
LPGLPAGVKF DPTDQELLEH LEGKARPESR KLHPLVDEFI PTIEGENGIC YTHPERLPGV  120
SKDGLVRHFF HRPSKAYTTG TRKRRKVHSE DEDGGGETRW HKTGKTRAVM CNGRPRGYKK  180
ILVLYTNYGK QRKPEKTNWV MHQYHLGSDE EERDGELVVS KVFFQTQPRQ CGSNATAMAK  240
VPAGDANNNP VVVDGHLQGG TTVVLREANN VAAEFYNTAM LGYGQGVPNN RADGHFKPNF  300
AVHAGRASFG P
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462926622
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU5507060.0KU550706.1 Bambusa emeiensis NAC1 (NAC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440245.11e-165NAC domain-containing protein 73
SwissprotO494591e-118NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A1E5VZX81e-173A0A1E5VZX8_9POAL; NAC domain-containing protein 73
STRINGSb09g028430.11e-164(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-116NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]